BAC Information

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BAC

Clone NameMSMg01-474G11
Chromosome18 (Build37)
Map Location 10,916,280 - 10,916,559
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1
Downstream geneLOC665296, 1010001N08Rik, Gata6, LOC665310, LOC100040148, Rbbp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474G11.T7 (MSMg01no474_g11.b1)MSMg01-474G11.TJ (MSMg01no474_g11.g1)
ACCAG556474AG556475
length722719
length of high quality
(start - end)
279 (76 - 354)189 (123 - 311)
definitionCHROMAT_FILE: MSMg01no474_g11.b1 PHD_FILE: MSMg01no474_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:51 2005CHROMAT_FILE: MSMg01no474_g11.g1 PHD_FILE: MSMg01no474_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAANTCTTTGTTTCCGAAGAATATTGTGGTTCACTCTTATAATCCCA
GCACTTGGGACCTGAGGCAGGAGCATTGTGGTGAGTTCTGGGTCAGACAG
TACTATAGTGAAACTCTTCCTACCTCAAACAGGCAGAAAGACTCTATAAA
TGTACATTGCTTCTATAATTCCCCCTTGATATGATTCAGTGATTATCTGG
AGGCCAGGGACTCTTTTTATTTATTTAGTATTTTATGCATACGGGTGTTT
TGCCTGCATGCAAGTGTTTTTTTGCATGCTGACCTGTTGAACTAGGTCAG
AAGAGTGTGGTAGAGCTGAAACTGGAGTTACAGACAGTTGCGAGCTGCCA
TGTGGGTTCTGTGATTCAAACCTTGGTCCTCTGGAATAGCAGTCAGCATT
CTTAACCACTGAACCATATCTCTAGCCCCTCCCCCACTTTTTTTCATTTT
TTTTTTAAAATCTCAATTTCACAAATGGGAGGAAAAATAAGATTCTTGTC
TATCTTTCCTGCTTATTCCTCTTCGCATATCTCTGAAAATGTGACTCCCT
TCTTTACTAAAGAATTTTGTATATTACACCACTTCTTCTTTTTTTTTTGC
ATTCTTCTCATTCTCCCCAGACTATTCCTGTTTGTTCCTCAATCTCAAAA
ATCCCCCCAACTTCAATTGCCC
CACATGATAGTGGGTAGGNCTGGNGGNCGCCGGTACATACCATGTAGGNG
AACTATAGAATGACAAACAACAATCCAGGACAGCCAGGGCAACACAGAGA
AACCCTGTCTCGAATATCCCCCAACAACAACAAAAAACAACAACTTAAAA
CTTACATATATCTCACACAAAAAGGCATATTACTAACAGGAATGCTGAAA
ACATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATT
TGGCAGTTTCTTGTTAAGTAGCCATGGATGGCCTGAAACTTACTATATAG
GCTTGGCTGTTCCTGGTTTTGCAACAGNACTGTGTCGACCTCCTGAATGC
TGACTCAAAGTCCAAACATTCCAAGATTTAATGGAAGGCAAGGTTTAAAT
AGGAACAAAATCACTGCAAACTTTGTGTAATATACCAGTATTATGTACTA
TTATAAAAATACAGAAAAATCTACGTTTAACATATATTATATTTAATATA
TACTATATACTATATAGCACATATAATTTATATAATATAACAAATACATA
TAGCACATATATTATTTATAACCATATTTGAAATATATATATAATATGTT
GATATATGCTATATATTTTACATATTACATATAGTTATATGATATGCCAC
ATATGCCCCTACCACATGCCTAAATGGCATAATCTCCATATACCAATACC
TTATTACTATAATTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_g11.b1 MSMg01no474_g11.b1 CHROMAT_FILE:
MSMg01no474_g11.b1 PHD_FILE: MSMg01no474_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:51 2005
         (279 letters)



>mm_chr18_10915967_10916646
          Length = 680

 Score =  495 bits (256), Expect = e-144
 Identities = 274/282 (97%), Gaps = 5/282 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtggttcactcttataatcccagcacttgggacctgaggcaggagcattgtggtgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 593 attgtggttcactcttataatcccagcacttgggacctgaggcaggaggattgtggtgag 534

                                                                       
Query: 61  ttctgggtcagacagtactatagtgaaactcttcctacctcaaacaggcagaaagactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttctgggtcagacagtactatagtgaaactcttcctacctcaaacaggcagaaagactct 474

                                                                       
Query: 121 ataaatgtacattgcttctataattcccccttgatatgattcagtgattatctggaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ataaatgtacattgcttctataattcccccttgatatgattcagtgattatctggaggcc 414

                                                                       
Query: 181 agggactctttttatttatttagtattttatgcatacgggtgttttgcctgcatgcaagt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 413 agggactctttttatttatttagtattttatgcatatgggtgttttgcctgcatgcaagt 354

                                                     
Query: 241 gttt---ttttgcatgctgacctgttgaactaggtcagaaga 279
           || |   ||  |||||||||||||||||||||||||||||||
Sbjct: 353 gtatgcatt--gcatgctgacctgttgaactaggtcagaaga 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space:   181170
Effective search space used:   181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)