Query= MSMg01no474_j21.b1 MSMg01no474_j21.b1 CHROMAT_FILE:
MSMg01no474_j21.b1 PHD_FILE: MSMg01no474_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:08 2005
(579 letters)
>mm_chr18_8236842_8237823
Length = 982
Score = 984 bits (509), Expect = 0.0
Identities = 563/582 (96%), Gaps = 3/582 (0%)
Strand = Plus / Minus
Query: 1 atcacagatggaacctgtacctgagcctgctttatagtcagccctgaactgggtttctgt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atcacagatggaccctgtacctgagcctgctttatagtcagccctgaactgggtttctgt 723
Query: 61 gaaatcatgccagaaccaagaaatgtataattcagtttttgagcagaaattcattaatga 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 722 gaaatcatgccagaaccaagaaatgtataatttagtttttgagcagaaattcattaatga 663
Query: 121 aaaatatagaatatgaa--agattaagtcctatgtcctctggtgtcatcaaaaacaaaaa 178
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaagtatagaatatgaaagagattaagtcctatgtcctctggtgtcatcaaaaacaaaaa 603
Query: 179 atatataaggtacaaattaatctaatcaattttaaattattctgtgaaaaatctgatgat 238
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ataggtaaggtacaaattaatctaatcaattttaaattattctgtgaaaaatctgatgat 543
Query: 239 agaaattttattgnaacagtaaaataaatattagagatcagcctataagtaagataaagt 298
||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 542 agaaattttatagtaacagtaaaataaatattagagattagcctatatgtaagataaagt 483
Query: 299 attttaagagccagccatcttagtatatcaactgacaattaaatacatttttcatgtttt 358
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 attttaacagccagccatcttagtatatcaactgacaattaaatacatttttcatgtttt 423
Query: 359 tcaacaacacagaaaaacacgatgcttcagtcagtagctctgcccagctagaacatttca 418
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 422 tcaacaacacagaaaaacacgatgcttcagtcagtagccctgcccagctagaacatttca 363
Query: 419 gaaaagaacagacagaagacagtatgaaaagtcagctaggcagttgcatggagagactga 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaagagaacagacagaagacagtatgaaaagtcagctaggcagttgcatggagagactga 303
Query: 479 aaagtgagtccagagctcagctgtgaattgtttgtgcatg-ttggtagaaattgctatta 537
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 302 aaagtgagtccagagctcagctgtgaattgtttgtgcatgtttggtagaaatcgctatta 243
Query: 538 tgagactgggggactctggggctcccctgggcttttaatgtc 579
|||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 242 tgagactgggggacactgaggctcccctggccttttaatgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 982
Length adjustment: 10
Effective length of query: 569
Effective length of database: 972
Effective search space: 553068
Effective search space used: 553068
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_j21.g1 MSMg01no474_j21.g1 CHROMAT_FILE:
MSMg01no474_j21.g1 PHD_FILE: MSMg01no474_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:08 2005
(518 letters)
>mm_chr18_8049471_8050390
Length = 920
Score = 886 bits (458), Expect = 0.0
Identities = 499/520 (95%), Gaps = 14/520 (2%)
Strand = Plus / Plus
Query: 1 aagaagagaatgcatagaatatatggataggtacaagggtcaggattctatttaaatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aagaagagaatgcatagaatatatggataggtacaagggtcaggattctattg------- 265
Query: 61 cagacatttgcatttaaatatacagacaaaaatggttggtaatattacaaaaattggtgc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 --g---tttgcatttaaatatacagacaaaaatggttggtaatattacaaaaattggtgc 320
Query: 121 tttaaattaaatagttaagaagggttagaggtagaacggctaatggattctaatatgtaa 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tttaaattaaatagttaagaagggttagaggtagaatggctaatggattctaatatgtaa 380
Query: 181 acgaagtaagtatatatgacaaccactgtttgttaacaatacattccttggccttttctg 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 acgaagtaagtatatatgacaaccactgtttgttaacaatacgttccttggccttttctg 440
Query: 241 tctaattagtgtatggtcattaactttctattctgtagaatttatttgcacttttttcta 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaattagtggatggtcattaactttctattctgtagaatttatttgcacttttttcta 500
Query: 301 cttttatgtatacccatcattttctttaaaaaaaaaaaa--gaaaagtagaaataggcac 358
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 501 cttttatgtatacccatcattttcttaaaaaaaaaaaaaaagaaaagtagaaataggcac 560
Query: 359 aaaagaacacagaaaaggaagtcaaacatttgacgttttgatgttaattgctgtcagtca 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 aaaagaacacagaaaaggaagtcaaacatttgatgttttgatgttaattgctgtcagtca 620
Query: 419 agcacttggggataaacttagcagatgatctaggtgtctgttcctcacctgggacaaact 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcacttggggatcaacttagcagatgatctaggtgtctgttcctcacctgggacaaact 680
Query: 479 caaaaccaccaagttttcctgatcgttttgcacatggcac 518
||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaaaccaccaagttttcctgatcgttttgcacatggcac 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 920
Length adjustment: 10
Effective length of query: 508
Effective length of database: 910
Effective search space: 462280
Effective search space used: 462280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|