BAC Information

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BAC

Clone NameMSMg01-474J21
Chromosome18 (Build37)
Map Location 8,049,683 - 8,237,623
singlet/doubletdoublet
Overlap geneLOC225134, LOC665132
Upstream geneArmc4, Mpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121
Downstream geneEG433158, EG545242, LOC665161, Fzd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474J21.T7 (MSMg01no474_j21.b1)MSMg01-474J21.TJ (MSMg01no474_j21.g1)
ACCAG556638AG556639
length727754
length of high quality
(start - end)
579 (72 - 650)518 (78 - 595)
definitionCHROMAT_FILE: MSMg01no474_j21.b1 PHD_FILE: MSMg01no474_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:08 2005CHROMAT_FILE: MSMg01no474_j21.g1 PHD_FILE: MSMg01no474_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,237,042 - 8,237,623)(8,049,683 - 8,050,190)
sequence
NTCTATATTTGCGGCGCTAAACGACTCCTATATTCAGAACACCGCGGAAT
TCCACAAACATTTCATGAGATATCACAGATGGAACCTGTACCTGAGCCTG
CTTTATAGTCAGCCCTGAACTGGGTTTCTGTGAAATCATGCCAGAACCAA
GAAATGTATAATTCAGTTTTTGAGCAGAAATTCATTAATGAAAAATATAG
AATATGAAAGATTAAGTCCTATGTCCTCTGGTGTCATCAAAAACAAAAAA
TATATAAGGTACAAATTAATCTAATCAATTTTAAATTATTCTGTGAAAAA
TCTGATGATAGAAATTTTATTGNAACAGTAAAATAAATATTAGAGATCAG
CCTATAAGTAAGATAAAGTATTTTAAGAGCCAGCCATCTTAGTATATCAA
CTGACAATTAAATACATTTTTCATGTTTTTCAACAACACAGAAAAACACG
ATGCTTCAGTCAGTAGCTCTGCCCAGCTAGAACATTTCAGAAAAGAACAG
ACAGAAGACAGTATGAAAAGTCAGCTAGGCAGTTGCATGGAGAGACTGAA
AAGTGAGTCCAGAGCTCAGCTGTGAATTGTTTGTGCATGTTGGTAGAAAT
TGCTATTATGAGACTGGGGGACTCTGGGGCTCCCCTGGGCTTTTAATGTC
TCCAATAGACTGAGATATTTTTGTCTTGGTGATCATCATCTCTTCTTACT
ATAAACAGGCGCCAAATGAGCTAAAGA
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGAGAATGCATAGAATATA
TGGATAGGTACAAGGGTCAGGATTCTATTTAAATATACAGACATTTGCAT
TTAAATATACAGACAAAAATGGTTGGTAATATTACAAAAATTGGTGCTTT
AAATTAAATAGTTAAGAAGGGTTAGAGGTAGAACGGCTAATGGATTCTAA
TATGTAAACGAAGTAAGTATATATGACAACCACTGTTTGTTAACAATACA
TTCCTTGGCCTTTTCTGTCTAATTAGTGTATGGTCATTAACTTTCTATTC
TGTAGAATTTATTTGCACTTTTTTCTACTTTTATGTATACCCATCATTTT
CTTTAAAAAAAAAAAAGAAAAGTAGAAATAGGCACAAAAGAACACAGAAA
AGGAAGTCAAACATTTGACGTTTTGATGTTAATTGCTGTCAGTCAAGCAC
TTGGGGATAAACTTAGCAGATGATCTAGGTGTCTGTTCCTCACCTGGGAC
AAACTCAAAACCACCAAGTTTTCCTGATCGTTTTGCACATGGCACCAATT
CCTCANGNTGTTTTATAGTTTGTATTTTAACTCATTTTGGAAATATAGAA
AGAAACATTTTTAAACATTTATCCATGCTACAACCTCTCACAAAAAAAGT
TGTTCCCCTATTGCTTGATTCCATGGCTGGGACAATTTTATAATGTGCCC
CAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_j21.b1 MSMg01no474_j21.b1 CHROMAT_FILE:
MSMg01no474_j21.b1 PHD_FILE: MSMg01no474_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:08 2005
         (579 letters)



>mm_chr18_8236842_8237823
          Length = 982

 Score =  984 bits (509), Expect = 0.0
 Identities = 563/582 (96%), Gaps = 3/582 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcacagatggaacctgtacctgagcctgctttatagtcagccctgaactgggtttctgt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atcacagatggaccctgtacctgagcctgctttatagtcagccctgaactgggtttctgt 723

                                                                       
Query: 61  gaaatcatgccagaaccaagaaatgtataattcagtttttgagcagaaattcattaatga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 722 gaaatcatgccagaaccaagaaatgtataatttagtttttgagcagaaattcattaatga 663

                                                                       
Query: 121 aaaatatagaatatgaa--agattaagtcctatgtcctctggtgtcatcaaaaacaaaaa 178
           ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaagtatagaatatgaaagagattaagtcctatgtcctctggtgtcatcaaaaacaaaaa 603

                                                                       
Query: 179 atatataaggtacaaattaatctaatcaattttaaattattctgtgaaaaatctgatgat 238
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ataggtaaggtacaaattaatctaatcaattttaaattattctgtgaaaaatctgatgat 543

                                                                       
Query: 239 agaaattttattgnaacagtaaaataaatattagagatcagcctataagtaagataaagt 298
           ||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 542 agaaattttatagtaacagtaaaataaatattagagattagcctatatgtaagataaagt 483

                                                                       
Query: 299 attttaagagccagccatcttagtatatcaactgacaattaaatacatttttcatgtttt 358
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 attttaacagccagccatcttagtatatcaactgacaattaaatacatttttcatgtttt 423

                                                                       
Query: 359 tcaacaacacagaaaaacacgatgcttcagtcagtagctctgcccagctagaacatttca 418
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 422 tcaacaacacagaaaaacacgatgcttcagtcagtagccctgcccagctagaacatttca 363

                                                                       
Query: 419 gaaaagaacagacagaagacagtatgaaaagtcagctaggcagttgcatggagagactga 478
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaagagaacagacagaagacagtatgaaaagtcagctaggcagttgcatggagagactga 303

                                                                       
Query: 479 aaagtgagtccagagctcagctgtgaattgtttgtgcatg-ttggtagaaattgctatta 537
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 302 aaagtgagtccagagctcagctgtgaattgtttgtgcatgtttggtagaaatcgctatta 243

                                                     
Query: 538 tgagactgggggactctggggctcccctgggcttttaatgtc 579
           |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 242 tgagactgggggacactgaggctcccctggccttttaatgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 982
Length adjustment: 10
Effective length of query: 569
Effective length of database: 972
Effective search space:   553068
Effective search space used:   553068
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no474_j21.g1 MSMg01no474_j21.g1 CHROMAT_FILE:
MSMg01no474_j21.g1 PHD_FILE: MSMg01no474_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:08 2005
         (518 letters)



>mm_chr18_8049471_8050390
          Length = 920

 Score =  886 bits (458), Expect = 0.0
 Identities = 499/520 (95%), Gaps = 14/520 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaagagaatgcatagaatatatggataggtacaagggtcaggattctatttaaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 213 aagaagagaatgcatagaatatatggataggtacaagggtcaggattctattg------- 265

                                                                       
Query: 61  cagacatttgcatttaaatatacagacaaaaatggttggtaatattacaaaaattggtgc 120
             |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 --g---tttgcatttaaatatacagacaaaaatggttggtaatattacaaaaattggtgc 320

                                                                       
Query: 121 tttaaattaaatagttaagaagggttagaggtagaacggctaatggattctaatatgtaa 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tttaaattaaatagttaagaagggttagaggtagaatggctaatggattctaatatgtaa 380

                                                                       
Query: 181 acgaagtaagtatatatgacaaccactgtttgttaacaatacattccttggccttttctg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 acgaagtaagtatatatgacaaccactgtttgttaacaatacgttccttggccttttctg 440

                                                                       
Query: 241 tctaattagtgtatggtcattaactttctattctgtagaatttatttgcacttttttcta 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaattagtggatggtcattaactttctattctgtagaatttatttgcacttttttcta 500

                                                                       
Query: 301 cttttatgtatacccatcattttctttaaaaaaaaaaaa--gaaaagtagaaataggcac 358
           |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||
Sbjct: 501 cttttatgtatacccatcattttcttaaaaaaaaaaaaaaagaaaagtagaaataggcac 560

                                                                       
Query: 359 aaaagaacacagaaaaggaagtcaaacatttgacgttttgatgttaattgctgtcagtca 418
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 aaaagaacacagaaaaggaagtcaaacatttgatgttttgatgttaattgctgtcagtca 620

                                                                       
Query: 419 agcacttggggataaacttagcagatgatctaggtgtctgttcctcacctgggacaaact 478
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcacttggggatcaacttagcagatgatctaggtgtctgttcctcacctgggacaaact 680

                                                   
Query: 479 caaaaccaccaagttttcctgatcgttttgcacatggcac 518
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaaaccaccaagttttcctgatcgttttgcacatggcac 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 920
Length adjustment: 10
Effective length of query: 508
Effective length of database: 910
Effective search space:   462280
Effective search space used:   462280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)