BAC Information

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BAC

Clone NameMSMg01-475I13
Chromosome18 (Build37)
Map Location 64,705,525 - 64,705,753
singlet/doubletsinglet
Overlap geneAtp8b1
Upstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars
Downstream geneLOC629480, Nedd4l, Alpk2, LOC667816, Malt1, LOC638570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475I13.T7 (MSMg01no475_i13.b1)MSMg01-475I13.TJ (MSMg01no475_i13.g1)
ACCAG557338AG557339
length776749
length of high quality
(start - end)
235 (330 - 564)67 (122 - 188)
definitionCHROMAT_FILE: MSMg01no475_i13.b1 PHD_FILE: MSMg01no475_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:21 2005CHROMAT_FILE: MSMg01no475_i13.g1 PHD_FILE: MSMg01no475_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGACCATCCGCG
GAATTCCCTGGATTACCCATCTCACCATTTTGCTCTAGTCTCTTAGATAA
CCTCTAACATTAAAACTCAAACTTAGGAAAGTCACACTTGTTGTGACAGG
CTAAGAGATGAGATTGACAGGCAATTAATATGCAAAGCCATCAAGAATGG
CCCCAATGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCGCCGACTGCT
CTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA
CCATCCGCTGTGAGATCTGGTGCCTTCTGTGCACAGCCACAGTGTACTTA
CGTATAATAAATAAATAAAGACATTTAAAAAAAAAGAAAAAGAAATAAAG
AATGGCCCCAATGAACTTTCTTGAGTGACAGGTAAGACTCACTACTGATA
CACACCAGCCAGGAGCCAGTGATGATTAAGGCACGGTTTTCTCCAGGTGG
AAAAAAGGGTTCATACACAGGAGGTGCAAATTTCGCAGAGACTCCACCTC
TGTTTCTCTGATTCTCCATCCTGGNGTGAAGAAGAGAGCTAGGGGAAAAT
AAATTGAAGAATTTGACACAGGTGATTATAAAGTCTCATACATATTATGT
GCGNGGATATATTTGTATGTGTACATATACCCCAACATATAATTTCAGTT
ATTATCCATCACAAATTGCCCATTTACACACCCCCCTTTCCTTCCCCTTA
ATATCCCCTCTTTTATTACTATTCTA
CTTTTCATGATATTGGTAGNCTGGGGGCGCCTGGTTCAGACTTTAGGTGA
CCTATAGAAGTACCGCGGACCTCCTGATCTTTCCAAACTTTTATCATGAA
TGGGTGTTGGATCTTGTCACAATGCTTTTTCTGCATCTAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGCTTATATAGCGGATTACTTTGATGGA
TCTTCGTACATTAAACCATCCCTGCATCCCTGGAATAACACCTACTTGTT
CACCATGGATGATTTCCCTAATGTGTCCCTGTATTCGGTTAGCGAGAACT
TTACCACTGTTTCCTGTTTCGAACCNCACACCACAACCCCCCACTGACGT
ACTCTATTTTTGTTGCCTCTTCCTGGCTTCATCTATCAAACTACTCTTGT
CTTTTTCTTCCGTCTCCCCCTCCCTTTTTTTTACCCCTCTCTTCTCTCCT
TTTCGCTCACCCCTCCTTTTATATTCTCCTCTCTTTTCTTTCTCTCCTCT
TCTTTTTTCTCTCCTCCCCTCCCTTTCTTCTTTCTCTCCCCCTCTCCCCT
CTCTCCATTCTTTTTCTTCTTCCTCCTCCTTTTCATTTTTTTCATTCATC
CACACCTATTTCTCCCCTTCTTTCCCCTTCCTCTACTTACTCACCCCCTC
TCCTCTTCCCCTTCTCTTTTCCACCCCTTCTTACTCCTTCATACCCTTTT
TTTCCTCCCTCTCCCCTTATCCTTTCCGTATTTTTCTCTTTCTCCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_i13.b1 MSMg01no475_i13.b1 CHROMAT_FILE:
MSMg01no475_i13.b1 PHD_FILE: MSMg01no475_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:21 2005
         (235 letters)



>mm_chr18_64705319_64705953
          Length = 635

 Score =  404 bits (209), Expect = e-117
 Identities = 226/235 (96%), Gaps = 6/235 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcacagccacagtgtacttacgtataataaataaataaagacatttaaaaaaaaagaaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||      ||||||||
Sbjct: 207 tgcacagccacagtgtacttacatataataaataaataaagacatt------aaaagaaa 260

                                                                       
Query: 61  aagaaataaagaatggccccaatgaactttcttgagtgacaggtaagactcactactgat 120
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aagaaataaagaatggccccagtgaactttcttgagtgacaggcaagactcactactgat 320

                                                                       
Query: 121 acacaccagccaggagccagtgatgattaaggcacggttttctccaggtggaaaaaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacaccagccaggagccagtgatgattaaggcacggttttctccaggtggaaaaaaggg 380

                                                                  
Query: 181 ttcatacacaggaggtgcaaatttcgcagagactccacctctgtttctctgattc 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatacacaggaggtgcaaatttcgcagagactccacctctgtttctctgattc 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)