BAC Information

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BAC

Clone NameMSMg01-475J08
Chromosome18 (Build37)
Map Location 80,383,438 - 80,383,723
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311
Downstream gene1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475J08.T7 (MSMg01no475_j08.b1)MSMg01-475J08.TJ (MSMg01no475_j08.g1)
ACCAG557376AG557377
length743775
length of high quality
(start - end)
248 (46 - 293)288 (81 - 368)
definitionCHROMAT_FILE: MSMg01no475_j08.b1 PHD_FILE: MSMg01no475_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:25 2005CHROMAT_FILE: MSMg01no475_j08.g1 PHD_FILE: MSMg01no475_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATTTCGAAAATGCGCGGAATTCATCTCTAATTTTCGACATAAGAAACT
TTAAATCTAGAATTTGCTTATCAATATCCTATGTCTATCAATATCTTTAT
GTTTGAATGCTTTTCCTCCATGTGCATATATATATATATATATATACATA
TATATATATATATATATATATATATATGCACATGTGTGCCTGGTGCCTGT
GGAAGCCAGAAGAGGGCACCAGATCCTATGGAACTGGAGCTAATGTTGTG
AGACACCATGTGCATGCAAAAGTATGCTCTCTACAAGGAATACGCATANC
GATAACCTCTAATCCATCCCTCCAGCTCTAGATGTTAAATTTTCTCATTG
CTTACCTGCTTCTATATTTTAGGCAAAGTCAGCTACTTACTTATTACTTG
ACGCTCTGTTGCCTAAGACTTCTAATTTAGCAATAAAATAAAGATTAGTC
CTATTTGGCAACATTTCCTAAGCTAGTGTCTGGCACCAAGCGTGGCGGAA
CATAGAGAGCGCAAGTAAACTACTTTCCGGTCAAGTTCTGGTGCTCTGCC
CCAGCTATTTCCCACAACTTTCTCCATTTCTCCCCCCCCCCTGGTTTGCG
TTTCTTTGTCCTTCCACTCACTATCCCCCCCTCTGTTTTTCTTTCTCTTC
TTCCTCCCCCTTCCTTTCTACCCCTTCCCCTTCCCTCCCCTCCTCTAACC
CTTTTCCCTACTTCCTCTTTTTCCACCTCCCTTCTTTCCTTTN
NTTTCCCATGTTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGCAAGGTCCAAGATGAG
CACCAGCATCTAGGCAGCAAGTGAGGAAGATGGGGGACAGAAGGGCCTTG
GGCTGCCTAGCTAGAGTCATCTGTCTGGGCAGAAAATTCAGTTTAAAATT
ATGATGTTAAGATTTACCTTGCTGGGCAGTGGTGGCGCACACCTTTAATT
CCAGCACTTGGGAAGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCC
TGGTCTACAGAGTGAGACCGAGTGAGTTCCTGGACAGTCAGGGCTATACA
GAGAAACCCCGTCTCATATTATCCCCTCTTTTTCCCCTCCCCCCAACCCC
CTTTTTTAAGATTCACCTTGGTGGGTCCTGGAGAGATGGTTCATCGCTTC
ACAGCACTGTGTTGTTCTTTCCGGAGTCCTGACCCCTCTACCCTTTTTCC
CCCCTTGTGTCCTTCCCTCTACTTCCGTAATCGGATCCCCTGTCCCCCCC
TTTTCCGCCCCTCCGCCTTTTCCCCTCTTTCCTCCTTCCCTTTTTCCTTC
CTCCCTTTCCCTCCTTTCCTTCCCCCCCCCCTCCCTTTCTCTTTTATACT
TTCCTTCCCCCCCCTTTCCTTCCCCTTTTGCCCCTTTTCTTCTCTCTCTT
CCCCTCCCTCTTTTTTCTTTCTCCCTCTCCCCACTTTTTTTCTCTTTTCC
CCCCCGTTTCCTCCCCCTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_j08.g1 MSMg01no475_j08.g1 CHROMAT_FILE:
MSMg01no475_j08.g1 PHD_FILE: MSMg01no475_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:25 2005
         (288 letters)



>mm_chr18_80383384_80384071
          Length = 688

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggcaaggtccaagatgagcaccagcatctaggcagcaagtgaggaagatgggggacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgggcaaggtccaagatgagcaccagcatctaggcagcaagtgaggaagatgggggacag 281

                                                                       
Query: 61  aagggccttgggctgcctagctagagtcatctgtctgggcagaaaattcagtttaaaatt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aagggccttgggctacctagctagagtcatctgtctgggcagaaaattcagtttaaaatt 221

                                                                       
Query: 121 atgatgttaagatttaccttgctgggcagtggtggcgcacacctttaattccagcacttg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 220 atgatgttaagatttaccttgctgggcagtggtggcacacacctttaatcccagcacttg 161

                                                                       
Query: 181 ggaagcagaggcaggcagatttctgagttcgaggccagcctggtctacagagtgagaccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 160 ggaagcagaggcaggcagatttctgagttcgaggccagcctggtctacagagtgaaaccg 101

                                                         
Query: 241 agtgagttcctggacagtcagggctatacagagaaaccccgtctca 286
           ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 100 agtgagttcctggacagtcagggctatacagagaaaccctgtctca 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)