BAC Information

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BAC

Clone NameMSMg01-476D17
Chromosome18 (Build37)
Map Location 58,183,085 - 58,183,402
singlet/doubletsinglet
Overlap geneFbn2
Upstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
Downstream geneSlc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476D17.T7 (MSMg01no476_d17.b1)MSMg01-476D17.TJ (MSMg01no476_d17.g1)
ACCAG557872AG557873
length776790
length of high quality
(start - end)
320 (67 - 386)243 (69 - 311)
definitionCHROMAT_FILE: MSMg01no476_d17.b1 PHD_FILE: MSMg01no476_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:17 2005CHROMAT_FILE: MSMg01no476_d17.g1 PHD_FILE: MSMg01no476_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGGATCCGCGGAATTC
ATCCAGTTCCCCAGCTTTCTCTAAAGTAGCAGACTGGCATATTTCGAGGA
TCAATGCACAGATCTTGGCTAGATCTTGTAATGTCTAGACGACTGTCTGG
GCTCAAAAAAAAAAAAAAAAATCCAAACTCAAGAAGCTCTTCAACTTAAT
CAGGCTAGACTAGACCTTAGGAACACTCCCATTTCCTCTTGTATCTCTGG
CGTGGGTTTATGCTGAGACAGTGGCTTCCCACGGCAGCTTCTCACAGATG
CTCTCTGCACACTCTGTTCTCTCAGGGTCTCACCACGTTCCCCTCTGTTC
TTTTTGTTTGGCCCCAGGGCGGAGTTACATAAGCTCTGGTGAACCCTTGC
TTTGTGGCATCTCTACACCCCGCTGTCCACTTACAGTATCGGGTCGGGCC
TCAACCTTACGATGCTTGCCATCATTGGGAAACAATATCCCATATTGTCC
CACCAATTGAGATGTTGCTCCTCTACCAAAATGACAGTTATGGATTATCC
ACGTCATATATTTCCATCGTTAATTATCTATAATTACCCCTATGTTGCCT
CCATGACTTCTTTTCTTTACTCCTCTCCCCTTCCCTTCCTTTATTCCCTT
ATTTCCCCTTCCTCCCCTCATCATTCCTTCATATTACTTTCCTCTTCATG
TCTCTTTTTTCCCTTCCCTCGCTTTATTCCCCATAACTTTCCTATCTTTT
CCAACTCTCTCCTATCTCCCCTTCCG
ACAGTGGGAGGCCTGGCGGGCGCCTGTTTCACAACATTAGGTGACCTATA
GAAGTTCCGCGAAATTCAAAAAGCAATGAACATACTATGCAGCAAATCCC
GGCTATCGATGAGAGAAAGAAAAATGGACAGGATGAGCCATCCGACTTTC
CAGTTAGCTGCTGGAGTCTCCCATGCTGTGTTACAGTTAGAAAGGACACA
GGCCCAGCCTCACAGACTCCCTGAGATGCAGTAAGGCAGTTGAGATCCCA
GAAGACCACGATGGCTAGAATTCTTAGGACAAAGCACTAAGGAGGAGTTG
AACTTCTATATTTTTCTGTACATACGGGATCACACCATTCGCCTCCGTAA
AATGTGATGAGGCCATGAGGTGCTTGAGCCGTCATCCTAAAACTGGAGAA
GGAATAGCACAACCCAGGAGCCTCATAATGAATCTTGAGGTGTGCTCTTC
CATCAGACTCAGATGTAAAATCACATAGGTGTGGACTTTAACACTCACGA
TAGTATTTATAGCTCACGTTGCCAAAAAATACAAGCAACTAATTAGCCAT
ATATAAAATTTTATTCTGCTCCTGACTATTGACTCTTATCTACTGCTCTC
TCTTCTTGATGACCCCCCACTCCTTTTATTTTTCTTTCCAACCCTTCACG
TTTATTATCAACCCCCCCCCCTTTTTTTCCGCTCATCTCTTGTCCTTTAT
CTCTGGCCCCCTATTATGTTTATTACTTCATTCTTCCCCCTTTCCTGGTT
TCTTCCTCTCCCCCCCCGCTTTTTATTTCTTCTTTCTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_d17.b1 MSMg01no476_d17.b1 CHROMAT_FILE:
MSMg01no476_d17.b1 PHD_FILE: MSMg01no476_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:17 2005
         (320 letters)



>mm_chr18_58182885_58183602
          Length = 718

 Score =  545 bits (282), Expect = e-159
 Identities = 310/320 (96%), Gaps = 2/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctaaagtagcagactggcatatttcgaggatcaatgcacagatcttggctagatct 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctaaagtagcagactggcgtatttcgaggatcaatgcacagatcttggctagatct 260

                                                                       
Query: 61  tgtaatgtctagacgactgtctgggctcaaaaaaaaaaaaaaaaatccaaactcaagaag 120
           |||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||
Sbjct: 261 tgtaatgtctagacgactgtctaggctcaaaaaaaaaaaaaaa--tccaaactcaagaag 318

                                                                       
Query: 121 ctcttcaacttaatcaggctagactagaccttaggaacactcccatttcctcttgtatct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 319 ctcttcaacttaatcaggctagactagaccttaggaacactcccatttcctcttgtctct 378

                                                                       
Query: 181 ctggcgtgggtttatgctgagacagtggcttcccacggcagcttctcacagatgctctct 240
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 379 ctggcgtgggtttatgctgagacagtggcttcctgcggcagcttctcacagatgctctct 438

                                                                       
Query: 241 gcacactctgttctctcagggtctcaccacgttcccctctgttctttttgtttggcccca 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 439 gcacactctgttctctcagggtctcaccacgttcccctctgttccttttgtttggcccca 498

                               
Query: 301 gggcggagttacataagctc 320
           | | ||||||||||||||||
Sbjct: 499 gagtggagttacataagctc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 718
Length adjustment: 9
Effective length of query: 311
Effective length of database: 709
Effective search space:   220499
Effective search space used:   220499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)