BAC Information

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BAC

Clone NameMSMg01-476G15
Chromosome18 (Build37)
Map Location 16,062,971 - 16,063,161
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551
Downstream geneEG225228, LOC100040202, Ppia-ps18_172.1, EG665509, Cdh2, LOC665519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476G15.T7 (MSMg01no476_g15.b1)MSMg01-476G15.TJ (MSMg01no476_g15.g1)
ACCAG558012AG558013
length787784
length of high quality
(start - end)
242 (73 - 314)191 (125 - 315)
definitionCHROMAT_FILE: MSMg01no476_g15.b1 PHD_FILE: MSMg01no476_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:31 2005CHROMAT_FILE: MSMg01no476_g15.g1 PHD_FILE: MSMg01no476_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAAATTTGCGGCGCTAAANGAATCACTAATCCGACCGAGGCGCGGAATT
CCCAAGTTACTGCACCTAGAGGTCCAAAGACTCCAGTAGGCAGAGTTTGA
ACTCCCATTTCTGGGGTTAATACTGCGTGGGTGGTGGAACAGAGGTCCAA
TCCTGCACCTCCTGGGTTTGCCCTGACAAGTACAAAAACTGATCTCTTTG
GCTGGGCATCAGGTTTACCACCCCATAAGCTCTTTGCTGCGAATGGGTTA
GGGCCTGGGGCTGGCCCCTCCTCTCATTTCCTGGCAACAGACAGCCCAGA
ACACCTGGCTTATATCTGTTTACCCTAGCCCAATGGTTTCCTTTCCTGCA
CTTGTGTTAAATCCCTGGCACACGGTTTGCTTGTCCACTCTCCGTACCTT
TGTTCTTAGGACAATTACTTTTAAAATGACCCATACTCCCACACTTAATA
CATGCATTATTCCCTCGCTTTCATGATAATATTGCTTATACGGTGGTCCC
CTGCACATCATCATAAGACAGCCTGATGTTTGTCCCTATCCTGACCTTTC
TCGCCCTATCTGCCCTGTCCCTCTTCCTACCCTTATTACTTTTTCCATTC
CTTTCCCTTACCTATTTCCATACCCCCCTTTCCTTCCCTGCCTCCTCCTT
CCCTGCGTTTTTCCTTCTCCTCTTCCTCCCCCTATATTTCCCCTTTCCCC
CTTTCCCTTCTCTTATTTTATTTACGCCTATCTGCCTCCTTACTATTACG
CCTTTCCCGCTCCCGTTTTCTCCACCCCACCCTTTTC
CATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTACCAGCGACAATTCCTCGGAATCTACAAGCCTAGCTAGGCT
GCTATATACAGCAGCAAACACGAAGAGATGGACCCTTTTATACACAATGT
GAAAAAGCAGGGACCTCTACTTGACCTGTACCCACCATGGCATGAACACA
CAGGCACACATGCACACATGCATGCATACACACTGGAGCAGAAATAGACT
GTTGAGCATCTCAAGATTCTGTTCACAATTCCAGGTGTTCTTAATGATAA
AAGTCAGAAATTTACTAACCTAATTTGAAAAAAGAATCAGATGAATATAA
ACATAGCTCATAATTTTACATTTATTTTTGCTCTGGCCCATTGGTCTCGC
AAACTTTATATGCCTCAGTACAGGGGAACGACAGGTCCAAGAAGCGCCAG
CGTTCGCCCTTTCCCTCTCCTTTCCCACTTTTTTTCTCATTACCCCTCTT
TTTCCTATCCTTCCCCCCTCTTTCTTTTTTTCTTTTTCCTCCTTCTCTTA
TCCCCCTTTCTTTTTTTCCTACCTCTTTCTTCTCCTTTTCCTTTTTCCTC
CCTCTCTCCTTTCTCCCCTTTTCCTTTATTTACCCCCCCTTCTTTTTTCC
ACCTCTTTCTTTTTTTTTTTTCTCCCCTACTCTCTCTCTCCCCTTTTTCT
CCTCCCCCCCCCTCTTTCTCTTTATTTTTTTTCCTCCCCCTTCCTCTCCT
CTCCTCCCCTTTCCTCCCCTCTCCTCCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_g15.g1 MSMg01no476_g15.g1 CHROMAT_FILE:
MSMg01no476_g15.g1 PHD_FILE: MSMg01no476_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:31 2005
         (191 letters)



>mm_chr18_16062771_16063361
          Length = 591

 Score =  362 bits (187), Expect = e-104
 Identities = 190/191 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagatggacccttttatacacaatgtgaaaaagcagggacctctacttgacctgtaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagatggacccttttatacacaatgtgaaaaagcagggacctctacttgacctgtaccca 260

                                                                       
Query: 61  ccatggcatgaacacacaggcacacatgcacacatgcatgcatacacactggagcagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatggcatgaacacacaggcacacatgcacacatgcatgcatacacactggagcagaaa 320

                                                                       
Query: 121 tagactgttgagcatctcaagattctgttcacaattccaggtgttcttaatgataaaagt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagacagttgagcatctcaagattctgttcacaattccaggtgttcttaatgataaaagt 380

                      
Query: 181 cagaaatttac 191
           |||||||||||
Sbjct: 381 cagaaatttac 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)