BAC Information

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BAC

Clone NameMSMg01-476M10
Chromosome18 (Build37)
Map Location 49,808,697 - 49,808,927
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M10.T7 (MSMg01no476_m10.b1)MSMg01-476M10.TJ (MSMg01no476_m10.g1)
ACCAG558287AG558288
length779760
length of high quality
(start - end)
234 (76 - 309)232 (84 - 315)
definitionCHROMAT_FILE: MSMg01no476_m10.b1 PHD_FILE: MSMg01no476_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:59 2005CHROMAT_FILE: MSMg01no476_m10.g1 PHD_FILE: MSMg01no476_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAACAGGATCCGCGG
AATTCAAGCAATCCCGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGAT
GTTACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCTTATAC
AACCCAAGACTACCAGCCCAGGGATGGCACCACCCACAAGGGCTGCTTTC
CCCTTGATCATTAATCGAGAAAATGCCCCACAGCAGGATCTCATGGAGGC
ACTTGCCCAACTGAAGCTCCTTTCTCTGTGATAATTCCAGCCTGAGTCAA
GTTGACACACAAAACCTTTTTTTTCACCCCACAAAGCAAACTATGGCTGC
TTCCAGATCTTCCCAGCCTATCATCAAAGGCGATCTCAGCTTCTCTACTG
ATGCACTGCCTAACAGCTAAAGCAATACTCCCAAGCACCACTCATATCTT
CTCCAACCCATAGTCTCCACCGTACTACTGTTCCCCACTCCTTATTTTTC
CATACCCACCCGATTATCTTACTTCCAAATAGCATCCCACACGCGCCCTG
GTCCTATTTTGTTTCTATCCCCCCCAATCATTCCAATCTCCTTAGTTCTA
CTTCTACCTTTCCTTCTGCCTTCCCTGTCCTCTTCACGCAACTTTCCCTT
ATCTTCTTCCCCCCCCCCTTGCCCCCCCTGTTTCTATTCTCCCCCTTTTT
TCTTATCCCTCCACTTTCATACCCCCTTTCTCCTTTTCTCCTCCCAATAT
TCACCTCTTCTCTTTTCCCTTCTAATCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACCAGAAACAATTCTTGGGNAATCGAGGATGACCATGA
ATACTTGGTTCTTCTGTTCTCCACCTCTCTAGTGCGAGGATTAAGGGTTT
TAATACCAGGAAACCACATTATTCTCACAACAATTTCTTTTCTCTTTGCT
GAGAGATACTCGTATCCTATTCATATATGAATTTTCATGGCATGTTTTTA
CATTTTTACTAGTAAAGTATAGTACACTTACCAGTGTGAAACTGGAGCTC
ACTGTTTAATATTTAACTCCTACTTTCCCAGTTATAAATGGAAATATTTA
AATAAATTCTGCTACTGGAATAGAGAAGGGTGGCAACAAAGGATAAACCA
AGTTTGTGAGATATAACTGGATGCAAGTTTGTCTAAATCATTTATCTATC
CTTATTTCTCTTTCTTAGCAACTGAGTCTTAATGGCGAGTTCTAACTTTA
GCTAGAATTCTTGAAGACTTTGAAGTAGCCCACTAATTAAAGAATTACTT
GTTGTTGCACAGACTAGGACCATTTTCCACCATTGGATAAAACACTTTTT
TCTGGAGCCTATGCCTTAACTATTTGCCAGTCAGCCAGGCCACCCATTCT
TTTATCTTTTTTCCCCGTCAGTCATTTGACCAATCCTTCTTCCTCGCGCA
TCTATTCACATCGCCCCATCTATTTTTATACTATTGCCTTTCTTCTAATA
TGGTTCGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m10.g1 MSMg01no476_m10.g1 CHROMAT_FILE:
MSMg01no476_m10.g1 PHD_FILE: MSMg01no476_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:59 2005
         (232 letters)



>mm_chr18_49808437_49809068
          Length = 632

 Score =  410 bits (212), Expect = e-119
 Identities = 227/232 (97%), Gaps = 1/232 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcgaggatgaccatgaatacttggttcttctgttctccacctctctagtgcgaggatta 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 491 atcgaggatgaccatgaatacttggttcttctg-cctccacctctctagtgcgaggatta 433

                                                                       
Query: 61  agggttttaataccaggaaaccacattattctcacaacaatttcttttctctttgctgag 120
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 432 agggttttaataccagcaaaccacgttattctcacaacaatttcttttctctttgctgag 373

                                                                       
Query: 121 agatactcgtatcctattcatatatgaattttcatggcatgtttttacatttttactagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agatactcgtatcctattcatatatgaattttcatggcatgtttttacatttttactagt 313

                                                               
Query: 181 aaagtatagtacacttaccagtgtgaaactggagctcactgtttaatattta 232
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 aaagtatagtacacttagcagtgtgaaactggagctcactgtttaatattta 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)