Query= MSMg01no476_n16.b1 MSMg01no476_n16.b1 CHROMAT_FILE:
MSMg01no476_n16.b1 PHD_FILE: MSMg01no476_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:06 2005
(557 letters)
>mm_chr18_81089279_81090235
Length = 957
Score = 1025 bits (530), Expect = 0.0
Identities = 551/558 (98%), Gaps = 1/558 (0%)
Strand = Plus / Minus
Query: 1 ggtgaactagaaagcaagccctagggatctcagtgctgggattacaagcacgggccttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 ggtgaactagaaagcaagccctagggatctcagtgctgggattacaagcacgggccttgt 841
Query: 61 tttaaaatgcgggttacagagatcaaattca-gttcttgggatgggaagtatagtaagca 119
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 840 tttaaaatgcgggttacagagatcaaattcacattcttgggataggaagtatagtaagca 781
Query: 120 ctttacctgctgagtctatcttcctagcctgtctctgacagcagtactgtaggagtattg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ctttacctgctgagtctatcttcctagcctgtctctgacagcagtactgtaggagtattg 721
Query: 180 tacttgcatgtgtatttgttcaccaattgcatggctggtgcctgtggaggccagaagagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tacttgcatgtgtatttgttcaccaattgcatggctggtgcctgtggaggccagaagagg 661
Query: 240 gcatcgcatctcttgtgactggagttacaagtggttgtgagctgccctgtggggggaaaa 299
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gcatcgcatcccctgtgactggagttacaagtggttgtgagctgccctgtggggggaaaa 601
Query: 300 aaatctaaggaatccatacacagaagaatgttggaatggaaaagtgagttataggttaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aaatctaaggaatccatacacagaagaatgttggaatggaaaagtgagttataggttaca 541
Query: 360 agataacaaaaccatttgtattctcatatagtagtcataacctcctctggaggagtagtc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 540 agataacaaaaccatttgtattctcatatagtagtcataacctcctctggaggagtagcc 481
Query: 420 agcactcttaactgctgggccatctctagcccatctactccttgccctgatatttaagtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agcactcttaactgctgggccatctctagcccatctactccttgccctgatatttaagtt 421
Query: 480 gtgtttatatacagttctttttagcagggtatttaaagaaatgctgtgtcaatgggtaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtgtttatatacagttctttttagcagggtatttaaagaaatgctgtgtcaatgggtaaa 361
Query: 540 ggaactgttctttccagc 557
||| ||||||||||||||
Sbjct: 360 ggacctgttctttccagc 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_n16.g1 MSMg01no476_n16.g1 CHROMAT_FILE:
MSMg01no476_n16.g1 PHD_FILE: MSMg01no476_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:06 2005
(500 letters)
>mm_chr18_80888755_80889655
Length = 901
Score = 884 bits (457), Expect = 0.0
Identities = 490/501 (97%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 1 catacacaaacctcccaggtcttatatgcagcacccacaaccccaaaggccttagaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacacaaacctcccaggtcttatatgcagcacccacaaccccaaaggccttagaagac 260
Query: 61 aatcctgtcctctggggccagtgagttctcaggctctggctccgaagctccccacggtgt 120
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcctgtcctctggggccagttagctctcaggctctggctccgaagctccccacggtgt 320
Query: 121 ccttctttccacggagagttgggtttaatctgaagcccctgctgcccccatattgcacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttctttccacggagagttgggtttaatctgaagcccctgctgcccccatattgcacag 380
Query: 181 agcacattccagggctgactccacagaacaactaagaatcaggagcatcacagaggttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacattccagggctgactccacagaacaactaagaatcaggagcatcacagaggttca 440
Query: 241 ggtcttttagtcaactcatcttgagtgtctgtcctggctttatcagttagcatctgggca 300
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccttagagtcaactcatcttgagtgtctgtcctggctttatcagttagcatctgggca 500
Query: 301 ggttcacaagggacctccttgtctttgtcagtgatgagttggccgtgtggagccctgacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttcacaagggacctccttgtctttgtcagtgatgagttggccgtgtggagccctgacc 560
Query: 361 cggcccaatgcttctctatctgcaaagcctccttaagatgtggttgggtgacagccactt 420
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 cggcccagtgcttctctatctgcaaagcctccttaagatctggttgggtgacagccactt 620
Query: 421 cttcccagtcccaaactaccccttcctcc-tcctccaaatctccagggatatctggggcc 479
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 621 cttcccagtcccaaactacccctccctccctcctccaaatctccagggatatctggggcc 680
Query: 480 tatagcacagcagaaagacgg 500
|||||||||||| ||||||||
Sbjct: 681 tatagcacagcacaaagacgg 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space: 436590
Effective search space used: 436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
