BAC Information

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BAC

Clone NameMSMg01-477C11
Chromosome18 (Build37)
Map Location 83,015,274 - 83,015,598
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040871, B020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563
Downstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477C11.T7 (MSMg01no477_c11.b1)MSMg01-477C11.TJ (MSMg01no477_c11.g1)
ACCAG558572AG558573
length776739
length of high quality
(start - end)
78 (129 - 206)325 (324 - 648)
definitionCHROMAT_FILE: MSMg01no477_c11.b1 PHD_FILE: MSMg01no477_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:30 2005CHROMAT_FILE: MSMg01no477_c11.g1 PHD_FILE: MSMg01no477_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTATATCTCAGGCGGTATATTACTCACTTTTTCCAAAGATCCGCGGAA
TTCTGTGAGATTCCACTTTGCCTCTTAAAAAAACATACTCAACAAACCCT
TCTACAACAGTCTAAGGCTCTCATGTGAGGGGTGGTGGCTACCAACATCC
ATTTCCCCATTATCCACCAAAACAAGTGATTAAATTTTAAAAAGCATAAT
GTTAAAGAGAGACAGAGAAACTGGCAAAAATGGAAGGAGGTTGCTATTGA
CAAAATATTTAACACATGCCTGATATGCTACAGCCAATAAAGTTCTGGAA
AATATATCCTGATTCCTGCCAGAACTGAGGAAATGCCAGGTCCCAAAGGC
TCTTAAGGTCATTGCTAGGTCCTAGTCACCCACTGTTACAGCTGACACAC
TGTCTACACTTGCAGACTGCACGTGATCAAAGGCATCCCTATACAGTCAA
TTTGGAGACACCCAAGTTCACTCCTCAGGTACAGCCAAGTCTGTGCTGGT
CAGTATCGACAGAAACCGGTATTGACACCCAGATAGGGAGGCCACTTGTT
TTATCTGTTTGCTCCCAAATGTTTTAAAATTGGCTATTGAACAACAGATA
AATCTCTTTGGCTTTGTCGCTTGCCTTCTCTTCCCTATACTTAACAAACA
AAAAACTTGTTCCTAACTTCCCAATTCTTAAGTCTTTCATACAATATGAA
CATAGCCAAGCTTTACCACTTTCTCCAACCGTGATATTCAGACCCCCTCA
AACTCTTATTCATGTTTAATAACTTT
NCCCATACTGTGGGAGGCCTGGNGGCGCCTGTTTCAAACATGAGGTGAAC
NANAGAAGTTTCACAAACATCCATGTCTGCTGTCTGTGGGAACAACTGTG
TATAATCACAGCCTAATGCGGGATTTTGTCTACTGATGGGTTAAGGGCAC
TGGCTCTCAGTGGGTCCCTGCAGCATGGATGTTAGAGGCTAGAGGATGTT
GGAGATGATACCAAATTCAATCCTTGGAGCAGACAAGCTTGTGCTATTTT
TTCTCTAGTGCCACCCGAGAGGCTCTTGACATCTTTCTACCTCAAGGATG
AGGATACTTAATCTTCAGTGNATTGTCAGCTTCTCTGCCTCCCATCTTCT
GTGACGGTGACTCTGGGGTGCTGGATCCACCTCCCTCTTGCAGTTTGAGT
AAGACTTGCCCTTCCAGAAACTCAGGTGGAATTCTGTTTGCCGCTGTGGT
GCTGTGGCATGGTGAGGGCTGATAAGGGGTGGAGAGGGGTGGTAAGGGAT
GGCCTCGATCTTGTGGCAATCCTCCTGCCTCTGCCTCCTGAAGCAGGTAC
GCAAAGCCATGCCATTAGACTATTAAACTTGGTACAAAATCTGCTTGCTA
CCCGGTGGTAAAATCTGTCCTCAGAGAAAGGAAAGTCACAAGACCTAGAG
TTTCTCTCTCTCGGACCAGGAGCGCTCTCCTGTGATGATGGAGGCACTCA
GCTATAGAGTGCTATTCCTGTGGCTGGCTATGTTCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_c11.g1 MSMg01no477_c11.g1 CHROMAT_FILE:
MSMg01no477_c11.g1 PHD_FILE: MSMg01no477_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:31 2005
         (325 letters)



>mm_chr18_83015226_83015950
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 323/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcagcttctctgcctcccatcttctgtgacggtgactctggggtgctggatccacctc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 373 tgtcagcttctctgcctcccatcttctttgacggtgactctggggtgctggatccacctc 314

                                                                       
Query: 61  cctcttgcagtttgagtaagacttgcccttccagaaactcaggtggaattctgtttgccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cctcttgcagtttgagtaagacttgcccttccagaaactcaggtggaattctgtttgccg 254

                                                                       
Query: 121 ctgtggtgctgtggcatggtgagggctgataaggggtggagaggggtggtaagggatggc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 253 ctgtggtgctgtggcatggtgagggctgatgaggggtggagaggggtggtaagggatggc 194

                                                                       
Query: 181 ctcgatcttgtggcaatcctcctgcctctgcctcctgaagcaggtacgcaaagccatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctcgatcttgtggcaatcctcctgcctctgcctcctgaagcaggtacgcaaagccatgcc 134

                                                                       
Query: 241 attagactattaaacttggtacaaaatctgcttgctacccggtggtaaaatctgtcctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 attagactattaaacttggtacaaaatctgcttgctacccggtggtaaaatctgtcctca 74

                                    
Query: 301 gagaaaggaaagtcacaagacctag 325
           |||||||||||||||||||||||||
Sbjct: 73  gagaaaggaaagtcacaagacctag 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)