BAC Information

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BAC

Clone NameMSMg01-477E10
Chromosome18 (Build37)
Map Location 59,647,994 - 59,648,352
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik, 4833446K15Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477E10.T7 (MSMg01no477_e10.b1)MSMg01-477E10.TJ (MSMg01no477_e10.g1)
ACCAG558665AG558666
length717755
length of high quality
(start - end)		366 (46 - 411)652 (81 - 732)
definitionCHROMAT_FILE: MSMg01no477_e10.b1 PHD_FILE: MSMg01no477_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:40 2005CHROMAT_FILE: MSMg01no477_e10.g1 PHD_FILE: MSMg01no477_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCG
GAATTCTCTGCAGTGCTGCTGCCGAGCATTTTTAGTACTATTGCTTAAGT
CTTTTTCCTTTGCCTTGCATGTTTAAGAGTCTTTTGGACGTGCTGTTCAT
GAAAAATGCTGCATTTACACTGAAAGTTACAGCACAGGAGTGGGTTCCAA
ACAAATGTGTCTCTTCTTTTTAAAAAATGAGCCCTCAGCTTTATTAAAAA
TGAGCCCTAAGCTTTATTTGTTCATTCCTTGCATACGAAGTGGTCTTTGG
GCCAGAGTATCTTTGTCATAGACTTTAACCACTACACAACCACAACTACT
TTCCTGGGGTTTCCCTCGCCAACAGCGACCAACTCNNTTGTCTTCAGNNC
CTTTGGTGGGGTTAAATCTGGCCTGTTTAAACACCAAAAGGGGCTCCCCC
AACTTGGGAATTTTAATGGGCCACCCCCACCCGGGAAGNCAAAACCAACC
ACAAAAAGGGGGGTGGGGCCCTTTTTTTAAAACAGCCTCCTCCGGGAGAA
GGTGGGGGAAAAAAAACACCCCCCCCCCCCGTGGGNNTGGCCTCATAGAG
AAAAAAAAAGAGTTTTTTTCCTTCCCCCCCCTTTTTTTTTTTTTNTATAG
AAAGAGAGGGGNNNNNNNNNCNNGCGCNTTTCTGCATTTGAGCTAGCTTT
TACCTGCTTATTCATTN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCC
ATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTG
CCTTGCAGAAACTTTGGGGTTTCATTAGGTCTCATTTGTCAATTCTCGAT
CTTACAACACAAGCCATTGCTGTTTTTTTCAGGAATTTTCCCCCTGTGCC
CATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCT
CTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAA
GGAGATAAGTATGGATCGATTCGCATTCTTCTACACGATAACAACCAGTT
GTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTT
TAGCTCCCTTGTCGAAGATCAATTGACCATAGGTGTGTGGGTTCATTTCT
GGGTCTTCAATTCTATTCCATTGGTCTACTTTTCTGTCTCTATACCAGTA
CCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTGTGGCA
TGGTGATTCCACCAGAAGTTCTTTTATTCTTGAGAAGACTTTTTGCTATC
CTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_e10.b1 MSMg01no477_e10.b1 CHROMAT_FILE:
MSMg01no477_e10.b1 PHD_FILE: MSMg01no477_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:40 2005
         (366 letters)



>mm_chr18_59647790_59648553
          Length = 764

 Score =  652 bits (337), Expect = 0.0
 Identities = 355/363 (97%), Gaps = 6/363 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctctgcagtgctgctgccgagcatttttagtactattgcttaagtctttttcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctctgcagtgctgctgccgagcatttttagtactattgcttaagtctttttcct 264

                                                                       
Query: 65  ttgccttgcatgtttaagagtcttttggacgtgctgttcatgaaaaatgctgcatttaca 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 ttgccttgcatgtttaagagtcttttggatgtgctgttcatgaaaaatgctgcatttaca 324

                                                                       
Query: 125 ctg--aaagttacagcacaggagtgggttccaaacaaatgtgtctcttctttttaaaaaa 182
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtgaaagttacagcacaggagtgggttccaaacaaatgtgtctcttctttttaaaaaa 384

                                                                       
Query: 183 tgagccctcagctttattaaaaatgagccctaagctttatttgttcattccttgcatacg 242
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagccctaagctttattaaaaatgagccctaagctttatttgttcattccttgcatacg 444

                                                                       
Query: 243 aagtggtctttgggccagagtatctttgtcatagactttaaccactacacaaccacaact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtggtctttgggccagagtatctttgtcatagactttaaccactacacaaccacaact 504

                                                                       
Query: 303 actttcctggggtttccctcgccaacagcgaccaactcnnttgtcttcagnncctttggt 362
           ||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||
Sbjct: 505 actttcctggggtttccctcgccaacagcgaccaactc--ttgtcttcag--cctttggt 560

              
Query: 363 ggg 365
           |||
Sbjct: 561 ggg 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 764
Length adjustment: 9
Effective length of query: 357
Effective length of database: 755
Effective search space:   269535
Effective search space used:   269535
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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