BAC Information

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BAC

Clone NameMSMg01-477J14
Chromosome18 (Build37)
Map Location 45,504,335 - 45,504,998
singlet/doubletsinglet
Overlap genenone
Upstream geneMyot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477J14.T7 (MSMg01no477_j14.b1)MSMg01-477J14.TJ (MSMg01no477_j14.g1)
ACCAG558912AG558913
length7061,288
length of high quality
(start - end)		663 (44 - 706)---
definitionCHROMAT_FILE: MSMg01no477_j14.b1 PHD_FILE: MSMg01no477_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:05 2005CHROMAT_FILE: MSMg01no477_j14.g1 PHD_FILE: MSMg01no477_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAA
GTGCTTTCTCAGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATACTGGATTACGTTGATGGATTTCCATATATTGAACCATCA
CTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGA
TGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTTTGCATCG
ATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTT
CTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGGA
CTCGTGGAAATAAAAAGTTGTACAGTGAAGGACAGCATCACCTGAGTGGT
GAGGCTTCCTATGGAAGGAACCTTTTTAATTTAAAAAAATTCCCTTTTTA
CAATTGAAAACTTGACTTACATATACTTTCTCCTAAAGAGCCCCCTTTTT
TGCAATACTTTTTCTTTGTATTTCAGCTATAACTGTCCTATTTTCCACGG
TACTCTTTCTAGAGTGCTAGAGCAAAGAACAAAGAAATGTGAAAGGCTAG
AATACTATTTTATTATCCTTATACATATCCATGTACTTTATTATCTTGCC
TTATAN

CCGAGATCGCCATAAGAGTCGCACCACGTAGCGAGTGGGATTTATACTCT
CCCATATCTCTGAGAGGATAGAGTGTGATGAGCATTTCTCTCACATATGT
CCCAGATAGGAGAGGAGACGGCACAAGAGATTATGTTAGCGTTCTCCGTC
ACGAGCACCGCGCTTTCTCTAGCTTTGCGTCGTTTCGCGTCCACGTCCGC
CCTCAACACCACTCGGTAGTGATTTACAACTGACATATTATGCCGCGTCG
AGAGTAGTCGACTGTATACATCGTGCCTTGGCTGTAAGAGTGGAGCGTGG
GACGAGTACGAAGTAGTGGAAAGTCCTCTACAGTAGTTATCGGCGTCGCG
CGCCGAAGCGAATGTACGTAATCACCCACGGCGACACACCACATTAAAAT
ACACATTCTAAGAGTACACTTNTTTCTACACACACGTTACGCCGTCGGGA
TCGCGTAGATCGTCTCGCGACTCTATAGATGCGGGCGCAGAGATATCACC
ATATTTATATCATACAGAGCACGGCACTCGTTTATCGAGCGCCAACACAC
TATTATAAACCAGTCGCACCATGATATCTCCAGTCGCCACTCTCATCGAC
CCCGCCCCACATANCCCATACGCGTATCTATTATATAGTGCGTAGTTGGC
TTCGGCCGCGCCGACCACCGCTCGTATTCTGTAGGATACGCAGAACGCTA
CTGACTCAATAATTTCACGCACATTATCATTATTTGCGCCGCTTATTATG
GTACTATGCCGCGCGCATCTCTTGACTATTATTTCGCGCGTTACTCAGCA
CCCACCCCGTTTTACGCTCCGCGCGCTCCGTCTCACACGCTCGCTAATAT
TAATACGTCGTCGTACTCTGACGCCCGACGCTCTCGAGATTGTTTTATTA
TGAACACAGCACGTATATTCTCAGAACCCACGCCACTACGTTCTATATTA
TCTACCCGCGTCTGTATACTGTTTTAGCTGCGCGAAATATAGCGCCACAT
TATGGGTGTTGATGATGCGTCACATATTNTNTAGATCTGTGTTTGTCACT
ACGCACGCCTCGACGAGACATAATTATTNCACGCCGCGTCACGACTACTC
GCACGACAAGTTAATATGTTTATATGACGTTGATGCGCGACCCACGCACA
TAATTTATTGTATGTGTCGCGCGACTACGGCACGGTGTGTTCGCTACATT
ACTATCTTGATATACACATGTCTNTTTATCGCTATATACTCGCTACGATG
CCTTCTATACTNGTCGCCATATAACACCATGTTACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_j14.b1 MSMg01no477_j14.b1 CHROMAT_FILE:
MSMg01no477_j14.b1 PHD_FILE: MSMg01no477_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:05 2005
         (663 letters)



>mm_chr18_45504132_45505199
          Length = 1068

 Score = 1172 bits (606), Expect = 0.0
 Identities = 648/664 (97%), Gaps = 6/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgatctttcc-agacttttatcatgaatgggtgttggattttgtcaagtgctt 63
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 gaattcctgatctttccaagacttttatcatgaatgggtgttggattttgtcaaatgctt 263

                                                                       
Query: 64  tctcagcatctaacgagatgatcatgtggtttttgtctttgagtttgtttatatactgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcagcatctaacgagatgatcatgtggtttttgtctttgagtttgtttatatactgga 323

                                                                       
Query: 124 ttacgttgatggatttccatatattgaaccatcactgcatccctgggatgaaacctactt 183
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 324 ttacgttgatggatttccatatattgaaccatccctgcatccatgggatgaaacctactt 383

                                                                       
Query: 184 ggtcaggatggatgattgttttgatgtgttcttggattcggttagcaagaactttattga 243
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 ggtcaggatggatgattgttttgatgtgttcttggattcagttagcaagaactttattga 443

                                                                       
Query: 244 ggatttttgcatcgatattcataagggaaattggtctgaagttctctatctttgttggat 303
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggatttttgcatctatattcataagggaaattggtctgaagttctctatctttgttggat 503

                                                                       
Query: 304 ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttggggactcgtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttggggactcgtg 563

                                                                       
Query: 364 gaaataaaaagttgtacagtgaaggacagcatcacctgagtggtgaggcttcctatggaa 423
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 564 gaaataaaaagttgtacagtgaaggatagcatcacctgagtggtgaggctttctatggaa 623

                                                                       
Query: 424 ggaacctttttaatttaaaaaaa---ttccctttttacaattgaaaacttgacttacata 480
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaacctttttaatttaaaaaaaaaattccctttttacaattgaaaacttgacttacata 683

                                                                       
Query: 481 tactttctcctaaagagccccc--ttttttgcaatactttttctttgtatttcagctata 538
           ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||
Sbjct: 684 tactttctcctaaagagcccccctttttttgcaatacttttcctttgtatttcagctata 743

                                                                       
Query: 539 actgtcctattttccacggtactctttctagagtgctagagcaaagaacaaagaaatgtg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgtcctattttccacggtactctttctagagtgctagagcaaagaacaaagaaatgtg 803

                                                                       
Query: 599 aaaggctagaatactattttattatccttatacatatccatgtactttattatcttgcct 658
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 804 aaaggctagaatactattttattatcgttctacatatccatgtactttattatcttgcct 863

               
Query: 659 tata 662
           ||||
Sbjct: 864 tata 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1068
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1058
Effective search space:   690874
Effective search space used:   690874
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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