Query= MSMg01no477_l03.b1 MSMg01no477_l03.b1 CHROMAT_FILE:
MSMg01no477_l03.b1 PHD_FILE: MSMg01no477_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:12 2005
(588 letters)
>mm_chr18_39585531_39586519
Length = 989
Score = 1054 bits (545), Expect = 0.0
Identities = 575/589 (97%), Gaps = 10/589 (1%)
Strand = Plus / Minus
Query: 5 ggaattccaga----tgtttgccttaaaaagacatgtaattggtagtacatggccattct 60
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggaattccagacgactgt----cttaaaaagacatgtaattggtagtacatggccattct 590
Query: 61 cattctttgtgaaataatgaacactagctcaaatcccctgttttgttacaaggaatgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cattctttgtgaaataatgaacactagctcaaatcccctgttttgttacaaggaatgaat 530
Query: 121 agactagtggatcattctattatactaacctgag-cctatagctaagattctcacttata 179
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 529 agactagtggatcattctattatactaacctgagccctatagctaagattctcagttata 470
Query: 180 ctacacactggataaagaaataaatatcagcataatacacagtcaatcttttagttagac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctacacactggataaagaaataaatatcagcataatacacagtcaatcttttagttagac 410
Query: 240 ataaatatacactgaattttttctactctagaagtaatttttccccagtttttccagcaa 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ataaataaacactgaattttttctactctagaagtaatttttccccagtttttccagcaa 350
Query: 300 cactgatataaggattctctgaaagacaacagatgtaggggtgtttttatggggtaaaat 359
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 349 cactgatataaggattctctgaaagacaatggatgtaggggtgtttttatggggtaaaat 290
Query: 360 tttagtgctttaactgtggatacaatctgttgtttctccttttgctgcatgatggaagtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tttagtgctttaactgtggatacaatctgttgtttctccttttgctgcatgatggaagtt 230
Query: 420 tttaaaaagaatttatttatccttatttatatgtataaatgtttacctgtataaacactg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tttaaaaagaatttatttatccttatttatatgtataaatgtttacctgtataaacactg 170
Query: 480 tgtgcctggtacctgcagagctaaagggcatctggttccctagaattggagttatagaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgtgcctggtacctgcagagctaaagggcatctggttccctagaattggagttatagaca 110
Query: 540 gttgtgacctgctgccatgtggggtgctaggaactgaaccaaagtcctt 588
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 109 gttgtgacctgctgccatgt-gggtgctaggaactgaaccaaagtcctt 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_l03.g1 MSMg01no477_l03.g1 CHROMAT_FILE:
MSMg01no477_l03.g1 PHD_FILE: MSMg01no477_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:12 2005
(489 letters)
>mm_chr18_39407137_39408025
Length = 889
Score = 915 bits (473), Expect = 0.0
Identities = 485/489 (99%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgc 260
Query: 61 tgggactaaaggcatgcgccatcacgcccggcttgttctgacctttcttaaatggaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggactaaaggcatgcgccatcacgcccggcttgttctgacctttcttaaatggaatat 320
Query: 121 tctttattatagaaagatagtggtggcatggtgtcaatatgtcgagtttactcaactcat 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttattatagaaagatggtggtggcatggtgtcaatatgtcgagtttactcaactcat 380
Query: 181 taagtcccatactttctgaaccgacgtgctgcaaatccgctcttagccagtggtttgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtcccatactttctgaaccgacgtgctgcaaatccgctcttagccagtggtttgctt 440
Query: 241 gtgtctttaagccagaccttttgggtaagccgatgcacatttatagatgattgttatggt 300
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgccattaagccagaccttttgggtaagccgatgcacatttatagatgattgttatggt 500
Query: 301 tagttttccttcatctgttaagcacttggtattaccttccattgtgggcacacatacata 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 tagttttccttcatctgttaagcacttggtattaccttccattgtgggcacacatatata 560
Query: 361 taccataaaggtttacaaggctgttaaaaagaaccaagaatgttttgtgcattggtgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taccataaaggtttacaaggctgttaaaaagaaccaagaatgttttgtgcattggtgagg 620
Query: 421 aacaagtgaacagaatcaaggacttgtccattattgatcacttttgtgtgtgtgtgtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaagtgaacagaatcaaggacttgtccattattgatcacttttgtgtgtgtgtgtgtg 680
Query: 481 tgtgtgtgt 489
|||||||||
Sbjct: 681 tgtgtgtgt 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
