Query= MSMg01no478_a18.b1 MSMg01no478_a18.b1 CHROMAT_FILE:
MSMg01no478_a18.b1 PHD_FILE: MSMg01no478_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:40 2005
(682 letters)
>mm_chr18_31129549_31130626
Length = 1078
Score = 1168 bits (604), Expect = 0.0
Identities = 628/638 (98%), Gaps = 4/638 (0%)
Strand = Plus / Minus
Query: 45 cttcttactggtttgcctcatccagtcttgatatgagggtatgtgcctagtcttattgtg 104
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 cttcctactggtttgcctcatccagtcttgatatgagggtatgtgcctagtcttattgtg 1019
Query: 105 atttgtcatgtcttgtttggttgatgtccttgggagaaggagtctggtcttttctaaagg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 atttgtcatgtcttgtttggttgatgtccttgggagaaggagtctggtcttttctaaagg 959
Query: 165 gaactagaggaagagtggatctgaggaagagaatagatgagaagggaaaatttggagatg 224
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 958 gaactagaggaagagtggatctggggaagagaatagatgggaagggaaaatttggagatg 899
Query: 225 tggagggagaagtagagaaactgtatttgagatgtaatatatgagagaataataattatt 284
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 898 tggagggagaagtagagaaactgtagttgagatgtaatatatgagagaataataattatt 839
Query: 285 ttaaaaagttcttccataaagtataaatgattatgtcagcatttttatcccatttacttt 344
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 838 ttaaaaagttcttccataaagtataaa----tatgtcagcatttttatcccatttacttt 783
Query: 345 aaaaacatttcatagtaatcaatctcataccttaaacagaaagataaactaaataaaaat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aaaaacatttcatagtaatcaatctcataccttaaacagaaagataaactaaataaaaat 723
Query: 405 aaagtgtctaagacttcaataggaaagttcccctctatagatgaagaagcaggtccagaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aaagtgtctaagacttcaataggaaagttcccctctatagatgaagaagcaggtccagaa 663
Query: 465 gaaatggcatggctccaggcatgacaagtcagacaggccttctgtcctgcattctggttg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gaaatggcatggctccaggcatgacaagtcagacaggccttctgtcctgcattctggttg 603
Query: 525 tccttgccctcccctccactccttcttaggagttttgtagacaagcagtcacgataacag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tccttgccctcccctccactccttcttaggagttttgtagacaagcagtcacgataacag 543
Query: 585 tgactttggagatttcttcatctgatatttacttgtccctcatatgtacagcaaagagag 644
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 542 tgactttggagatttcttcatctgatatttacttgtccctcatatatacagcagagagag 483
Query: 645 agagagagagagagagagagagagagagagagagagag 682
||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agagagagagagagagagagagagagagagagagagag 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 25
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1078
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1068
Effective search space: 717696
Effective search space used: 717696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_a18.g1 MSMg01no478_a18.g1 CHROMAT_FILE:
MSMg01no478_a18.g1 PHD_FILE: MSMg01no478_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:40 2005
(617 letters)
>mm_chr18_30971216_30972230
Length = 1015
Score = 1127 bits (583), Expect = 0.0
Identities = 608/617 (98%), Gaps = 2/617 (0%)
Strand = Plus / Plus
Query: 1 aatcaaagtccctgtgtcagccacttcttcattttacaagtgatgaagatgaagctgata 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 aatcaaagtccctgtgtcagccacttcttcattttacaaatgatgaagatgaagctgata 260
Query: 61 tgaaaaacatttgctgggcctcatctcccaagatttaatcattgaaaggtagtatgtgaa 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tgaaaaacatttgctgggcctcatctcccaagatttaataattgaaaggtagtatgtgaa 320
Query: 121 aaaaaaacaactgttttagaaaactgaatgtacacagaaaatggtagtattgctggtgat 180
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 aaaaaa--aactgttttagaaaactgaatgtacacagaaaatggtagtatagctggtgat 378
Query: 181 cttcatctactcaatagatactcatggctctgttgtcataggtgcagcagtacagagcac 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttcatctgctcaatagatactcatggctctgttgtcataggtgcagcagtacagagcac 438
Query: 241 taacctggatatcatggctgctttgattttaaaatctatctattctttacagagaaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taacctggatatcatggctgctttgattttaaaatctatctattctttacagagaaacag 498
Query: 301 cagccatgtaggacaggtttttaaatgcctgaatctgttcattaacagatggacttcttc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 499 cagccatgtaggacaggtttttaaatgcctgaatctgttcgttaacagatggacttcctc 558
Query: 361 taaaatgtgggctttcaagaccaaaagattccaaggccaagtggcttgtgggggacatgt 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 559 taaaatgtgggctttcaagacctaaagattccaaggccaagtggcttgtgggggacatgt 618
Query: 421 aattttccagccagactgccagtcaggcatccttgcatttggatggatggtttctcaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aattttccagccagactgccagtcaggcatccttgcatttggatggatggtttctcaggg 678
Query: 481 accttggacagattgggcgcagcactgccacggaggtagtccggagaataatctcctgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 accttggacagattgggcgcagcactgccacggaggtagtccggagaataatctcctgga 738
Query: 541 agcctcaattagtgtttggtgtatgagcattaaacaatgcggaatgtggaaacaatacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agcctcaattagtgtttggtgtatgagcattaaacaatgcggaatgtggaaacaatacat 798
Query: 601 cacccggcaggccccag 617
|||||||||||||||||
Sbjct: 799 cacccggcaggccccag 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1015
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1005
Effective search space: 610035
Effective search space used: 610035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
