BAC Information

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BAC

Clone NameMSMg01-478F07
Chromosome18 (Build37)
Map Location 85,370,440 - 85,371,054
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478F07.T7 (MSMg01no478_f07.b1)MSMg01-478F07.TJ (MSMg01no478_f07.g1)
ACCAG559472AG559473
length745741
length of high quality
(start - end)
617 (61 - 677)653 (63 - 715)
definitionCHROMAT_FILE: MSMg01no478_f07.b1 PHD_FILE: MSMg01no478_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:02 2005CHROMAT_FILE: MSMg01no478_f07.g1 PHD_FILE: MSMg01no478_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACTTTTCTAAGAGGATCCGCGGAATTCTTTGT
TACGTTCAGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGAA
TCTTTTTCTAGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCT
GTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCTGTAGTAAA
GCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGA
AGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCTGAGGAGGATATATGAGAGGGAACTGTTTCTTCCTT
TTTGTCTTTGTAGACAGGGTTTTTCTATTTAGCCCTGGCTGTCCTGAAAC
TAATTATGTACACCAGGCTGGCCTCTAACTTCTTAGAGGTTGCCTGCCTC
TGCCTCCTGAGTGCTGGAGTTAAAAGTCATGGACCACTAATTCCCAGCTC
AGGAGGGAACAATTCTTACCTTGTGTGATACTAGAGGTACAATGGAAGAG
GCATACTCAGAACAGTCTAATAACTATATTGCTCATACTTCAGTGAGTTC
CTGTCTGAATTGAAAAAAAAATTCAGAGTCCATAGGGGAAGCAGGAACTT
TGGTCAAGGCAACACCTCTAAAATCTACTTGACACTTAGAGGATACACAT
TCCACATCAGACACTGCTCTAGAGGGCTTTCATATATTAAATTATTTTCA
CTACAACAACATAATACATTTTCAATTAATGCAACATGTTGGTACATTGT
TTACCATTCACCATTTTTATCAATAAGAACATTAATTGTGCTTTTTGAAT
ATATATATATATATACATATATATATATATATATATATATATACTAGAAG
TAGCCAGATACTGGGTAAACATAGTCTGAAGTATTGATTAGGAGTTTGGT
TAACAAAATATAAAAGGATCAACACTTAGTGTGAGAAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_f07.g1 MSMg01no478_f07.g1 CHROMAT_FILE:
MSMg01no478_f07.g1 PHD_FILE: MSMg01no478_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:02 2005
         (653 letters)



>mm_chr18_85370237_85371288
          Length = 1052

 Score = 1089 bits (563), Expect = 0.0
 Identities = 613/653 (93%), Gaps = 38/653 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaggaggatatatgagagggaactgtttcttcctttttgtctttgtagacagggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cctgaggaggatatatgagagggaactgtttcttcctttttgtctttgtagacagggttt 263

                                                                       
Query: 61  ttctatttagccctggctgtcctgaaactaattatgtacaccaggctggcctctaacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 264 ttctatttagccctggctgtcctgaaactaattatgtacaccaggctggcctctaactt- 322

                                                                       
Query: 121 ttagaggttgcctgcctctgcctcctgagtgctggagttaaaagtcatggaccactaatt 180
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 323 --agaggttgcctgcctctgcctcctgagtgctggagttaaaagtcgtggaccactaatt 380

                                                                       
Query: 181 cccagctcaggagggaacaattcttaccttgtgtgatactagaggtacaatggaagaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagctcaggagggaacaattcttaccttgtgtgatactagaggtacaatggaagaggc 440

                                                                       
Query: 241 atactcagaacagtctaataactatattgctcatacttcagtgagttcctgtctgaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactcagaacagtctaataactatattgctcatacttcagtgagttcctgtctgaattg 500

                                                                       
Query: 301 aaaaaaaaattcagagtccataggggaagcaggaactttggtcaaggcaacacctctaaa 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaaaa-ttcagagtccataggggaagcaggaactttggtcaaggcaacacctctaaa 559

                                                                       
Query: 361 atctacttgacacttagaggatacacattccacatcagacactgctctagagggctttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atctacttgacacttagaggatacacattccacatcagacactgctctagagggctttca 619

                                                                       
Query: 421 tatattaaattattttcactacaacaacataatacattttcaattaatgcaacatgttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatattaaattattttcactacaacaacataatacattttcaattaatgcaacatgttgg 679

                                                                       
Query: 481 tacattgtttaccattcaccatttttatcaataagaacattaattgtgctttttgaatat 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatattgtttaccattcaccatttttatcaataagaacattaattgtgctttttgaatat 739

                                                                       
Query: 541 atatatatatatacatatatatatatatatatatatatatactagaagtagccagatact 600
           |||||||                                  |||||||||||||||||||
Sbjct: 740 atatata----------------------------------ctagaagtagccagatact 765

                                                                
Query: 601 gggtaaacatagtctgaagtattgattaggagtttggttaacaaaatataaaa 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gggtaaacatagtctgaagtattgattaggagtttggttaacaaaatataaaa 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space:   670006
Effective search space used:   670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)