Query= MSMg01no478_j06.b1 MSMg01no478_j06.b1 CHROMAT_FILE:
MSMg01no478_j06.b1 PHD_FILE: MSMg01no478_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:20 2005
(227 letters)
>mm_chr18_76808293_76808919
Length = 627
Score = 366 bits (189), Expect = e-106
Identities = 216/225 (96%), Gaps = 3/225 (1%)
Strand = Plus / Plus
Query: 1 tccgctatgctgggagctcactctagcacaccaaagctcgttggccacagaaatgtagca 60
|||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 201 tccgctatgctgggagctcactctagcacaccaaagctggctgggtacagaaatgtagca 260
Query: 61 aataaacacggatctacaggtgcccagggagatcggaatgagcctcactctgcctcagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaacacggatctacaggtgcccagggagatcggaatgagcctcactctgcctcagtt 320
Query: 121 tccctatatggaattcggagacaatgagagagctcccatcaaagagatactgtgtattat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 321 tccctatatggaattcggagacaatgagagagctcccatcaaagagatactgtg-agtat 379
Query: 181 taaatggatacatgtatcaaatacatgcggggggg-ggggggggg 224
||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct: 380 taaatggatacttgtatcaaatacatg-gggggggtggggggggg 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space: 134724
Effective search space used: 134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no478_j06.g1 MSMg01no478_j06.g1 CHROMAT_FILE:
MSMg01no478_j06.g1 PHD_FILE: MSMg01no478_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:20 2005
(587 letters)
>mm_chr18_77016302_77017289
Length = 988
Score = 741 bits (383), Expect = 0.0
Identities = 454/489 (92%), Gaps = 23/489 (4%)
Strand = Plus / Minus
Query: 73 agagagctgctggtcttcaagatttctgcaccagaaatcttgaagattgattctaacatc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 agagagctgctggtcttcaagatttctgcaccagaaatcttgaagattgattctaacatc 929
Query: 133 tgtgaaggagtgctgcagtggcagaatggatgaacttgccagtgagagtgaggacaagca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tgtgaaggagtgctgcagtggcagaatggatgaacttgccagtgagagtgaggacaagca 869
Query: 193 ggcaaaaagcaaactttacttcttctgtatacttttatctgcattgccaggataaggtgc 252
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 868 ggcaaaaagcaaacttta---cttctgtatacttttatctgcattgccaggagaaggtgc 812
Query: 253 cactcatgttaagatcaagtcttctcactccaaataatatgaacaggaaggcccttcaca 312
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cactcatgttaagatcgagtcttctcactccaaataatatgaacaggaaggcccttcaca 752
Query: 313 ggagggaacccttcacaggggggaacccttcacaggggggaacccttcacaggggagaac 372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ggagggaacccttcacaggggggaacccttcacaggggggaacccttcacagggg----- 697
Query: 373 ccttcacagagggaacccttcacaggggggaacccttcacagagggaactcttcacagag 432
||||| ||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 696 -----------ggaacacttcacaggggagaacccttcacagagggaacccttcacaggg 648
Query: 433 gg-aagtccttcacaggggggaacccttcacagggggaacccttcacagagg-gaagtcc 490
|| || |||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 647 gggaac-ccttcacaggggggaacccttcacagggggaacccttcacaggggagaac-cc 590
Query: 491 ttcacaggggggaacccttcacaggggggaacccttcacaggggggaacccttcacaggg 550
|| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 589 tttacaggggagaacccttcacagggggggacccttcacaggggggaacccttcacaggg 530
Query: 551 ggaaccctt 559
|||||||||
Sbjct: 529 ggaaccctt 521
Score = 161 bits (83), Expect = 2e-43
Identities = 110/119 (92%), Gaps = 4/119 (3%)
Strand = Plus / Minus
Query: 471 cccttcaca-gagggaagtccttcacaggggggaacccttcacaggggggaacccttcac 529
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cccttcacaggagggaa-cccttcacaggggggaacccttcacaggggggaacccttcac 702
Query: 530 aggggggaacccttcacagggg-gaaccctttacatagggaagtccttcacagggggga 587
|||||||||| ||||||||||| |||||||| ||| |||||| |||||||||||||||
Sbjct: 701 aggggggaacacttcacaggggagaacccttcacagagggaac-ccttcacagggggga 644
Score = 155 bits (80), Expect = 9e-42
Identities = 122/138 (88%), Gaps = 9/138 (6%)
Strand = Plus / Minus
Query: 455 cccttcacagg-gggaacccttcaca-gagggaagtccttcacaggggggaacccttcac 512
||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 760 cccttcacaggagggaacccttcacaggggggaa-cccttcacaggggggaacccttcac 702
Query: 513 aggggggaacccttcacaggggggaacccttcacagggggaaccctttacataggg---a 569
|||||||||| ||||||||||| ||||||||||||| |||||||||| ||| ||| |
Sbjct: 701 aggggggaacacttcacaggggagaacccttcacagagggaacccttcaca--gggggga 644
Query: 570 agtccttcacagggggga 587
| |||||||||||||||
Sbjct: 643 ac-ccttcacagggggga 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 5
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
