Query= MSMg01no478_o17.b1 MSMg01no478_o17.b1 CHROMAT_FILE:
MSMg01no478_o17.b1 PHD_FILE: MSMg01no478_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:44 2005
(324 letters)
>mm_chr18_87771415_87772138
Length = 724
Score = 619 bits (320), Expect = 0.0
Identities = 323/324 (99%)
Strand = Plus / Minus
Query: 1 tagaatagctactttgccatgtaatcctgtaatggggtttatttttttagggataaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tagaatagctactttgccatgtaatcctgtaatggggtttatttttttagggataaaagc 465
Query: 61 acaacttttttgatggaaaagacattttctgaaaaattctagatacatgtttttaatatg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acagcttttttgatggaaaagacattttctgaaaaattctagatacatgtttttaatatg 405
Query: 121 aatgttgagaacagattctgatgtttagtgctctgtttgggagccttgagatggggccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatgttgagaacagattctgatgtttagtgctctgtttgggagccttgagatggggccta 345
Query: 181 aggggctaagatagacagcaagagacagaagagggggagatgcctattaattatctaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aggggctaagatagacagcaagagacagaagagggggagatgcctattaattatctaaag 285
Query: 241 ctaacaagagtaaaaaggtgtccttttttgaagtgctctaagatacctccatcatccctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctaacaagagtaaaaaggtgtccttttttgaagtgctctaagatacctccatcatccctc 225
Query: 301 tttgtgaaaatttaaataaaatca 324
||||||||||||||||||||||||
Sbjct: 224 tttgtgaaaatttaaataaaatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_o17.g1 MSMg01no478_o17.g1 CHROMAT_FILE:
MSMg01no478_o17.g1 PHD_FILE: MSMg01no478_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:44 2005
(626 letters)
>mm_chr18_87604192_87605218
Length = 1027
Score = 1120 bits (579), Expect = 0.0
Identities = 612/627 (97%), Gaps = 8/627 (1%)
Strand = Plus / Plus
Query: 1 tctgaagcaggaaaacaaaatttggcagagtcctttaacatccaagaagaaagagtaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaagcaggaaaacaaaatttggcagagtcctttaacatccaagaagaaagagtaata 260
Query: 61 aagaaccaagaagattatactcactcaggtgattgctataaggattgcacatattaaaga 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaccaagaagattacactcactcaggtgattgctataaggattgcacatattaaaga 320
Query: 121 atgataataggaagaatgataaaaattacaattattaagagcaatgctaatgaaaaaggg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgataatagggagaatgataaaaattacaattattaagagcaatgctaatgaaaaaggg 380
Query: 181 gacaacaagagcaaccat-aggaatacaatgagaaaacagcaactgaaagttgtatattt 239
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gacaacaagagcaaccataaggaatacaatgagaaaatagcaactgaaagttgtatattt 440
Query: 240 aatgaataaattaagttctattaagtgaatttcaaaaagtcagattactaatttaaaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgaataaattaagttctattaagtgaatttcaaaaagtcagattactaatttaaaata 500
Query: 300 attttaacttcatagtgagcccagggcccttaggggggaaaaattcaattacaaagtctc 359
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 attctaacttcatagtgagcccagggccattaggggggaaaaattcaattacaaagtctc 560
Query: 360 tcttcgaagagctccccctctttaattaaaataattctcagagtttcaagaaagtgttgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttcgaagagctccccctctttaattaaaataattctcagagtttcaagaaagtgttgg 620
Query: 420 ggatgtttttgtttttgttttttgttttgttcgtttgtttgtttgttttttttttggagg 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ggatgtttttgtttttgttttttgttttgttcgtttgtttgttt-------ttttggagg 673
Query: 480 cctgttcttttctgtagaaaaactgaagaggagtggctctacaggtgagggtagatgggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cctgttcttttctgtagaaaaactgaagaggagtggctctacaggtgagggtagatgggg 733
Query: 540 ttagggagctgggactagtggagggagaaactgtgtccgggatgtacactataaagatct 599
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 734 ttagggagctgggactagtggaggaagaaactgtgtccgggatgtacactctaaagatct 793
Query: 600 atttttaatgaaaacacacacacacac 626
|||||||||||||||||||||||||||
Sbjct: 794 atttttaatgaaaacacacacacacac 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space: 626472
Effective search space used: 626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
