Query= MSMg01no479_a17.b1 MSMg01no479_a17.b1 CHROMAT_FILE:
MSMg01no479_a17.b1 PHD_FILE: MSMg01no479_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:53 2005
(579 letters)
>mm_chr18_21843573_21844551
Length = 979
Score = 1042 bits (539), Expect = 0.0
Identities = 570/581 (98%), Gaps = 2/581 (0%)
Strand = Plus / Plus
Query: 1 ttgcagtgaacctgctactgggagtacagcactgccagaatctgggctctgtcctctact 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcagtgaacctgctactgggagtacagcactgccagaatctgggctctgtcctctacg 260
Query: 61 ataaagtatgacctgaaggatggataccaagactgaaacctgaatcctcaggatggggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagtatgacctgaaggatggataccaagactgaaacctgaatcctcaggatggggaa 320
Query: 121 acagaagggaacaaccacataaaagatgactcatgtttctctttatgagagacagtaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaagggaacaaccacataaaagatgactcatgtttctctttatgagagacagtaaga 380
Query: 181 ccacaaggggaggcatcattaacattagtggtcttgtttgtaatcatgggctttacaaac 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacaaggggaggcatcattaacatcagtggtcttgtttgtaatcatgggctttacaaac 440
Query: 241 atgccccaccatacgccccagttcccgaacaatcactgagaggtttattatttgtgaaga 300
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 atgccccaccagacgccccagttcctgaacaatcactgagaggtttattatttgtgaaga 500
Query: 301 aatgccaaggctaagtttgttcccaactaagttgtaatttacattaatccatttatacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgccaaggctaagtttgttcccaactaagttgtaatttacattaatccatttatacta 560
Query: 361 ttctatgtctgccacatagctagttatacctcctcagtttcacatgtctgatttcttcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 ttctatgtctgccacatagctagttatacctcctcagtttcacatgtctgacttcttcca 620
Query: 421 attcctggctggtaatctcccgtgcctgactctttgccagagttt--ctctctctctctc 478
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 621 attcctggctggtaatctcccgtgcctgactctttcccagagtttttctctctctctctc 680
Query: 479 tctgccggatgtcccaccttcaaattctgcctcggcttaattggccatcagattttcatt 538
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 681 tctgccggatgtcccaccttcaaatcctgcctcagcttaattggccatcagattttcatt 740
Query: 539 gacaggtgatacttccccagtgtacacaagagattatccct 579
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 741 gacaggtgatactaccccagtgtacacaagagattatccct 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_a17.g1 MSMg01no479_a17.g1 CHROMAT_FILE:
MSMg01no479_a17.g1 PHD_FILE: MSMg01no479_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:54 2005
(405 letters)
>mm_chr18_22035891_22036693
Length = 803
Score = 632 bits (327), Expect = 0.0
Identities = 386/407 (94%), Gaps = 6/407 (1%)
Strand = Plus / Minus
Query: 1 agtaacccaaccacaaaagaacgtacatggtattcattcactgataagtggatattagcc 60
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 667 agtaacccaaccacaaaagaacatacatggtattcattcattgataagtggatattagcc 608
Query: 61 caaatattgtgcattcctataaatgagacctctatatctgaacaagtctttgtatgctt- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caaatattgtgcattcctataaatgagacctctatatctgaacaagtctttgtatgcttc 548
Query: 120 -tttttttatttatggtattaacttgacttccatgtccaaattaagaatttcttcccttc 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttttttttatttatggtattaacttgacttccatgtccaaattaagaatttcttcccttc 488
Query: 179 ataaaccactttagcttttgtctgggagggtgtgttttttaatttttttcatgagatata 238
|||||||| | || ||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 487 ataaaccaatgtaacttttgtctgggagggtatggtttttaatttttt-catgagatata 429
Query: 239 ttttgctcattcttcgctttgtgtgtgtgtatatcgcaaaaaataaaaataaaaaagcac 298
|||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 428 gtttgctcattcttcactttgtgtgtgt--atatcgcaaaaactaaaaataaaaaagcac 371
Query: 299 acacaaacaaatcacacaaaacaaatctcaaagcaagcaggcaaaagactgataagcccc 358
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 370 acacaaacaaatcacacaaaacaaatctcaaaacaaacaggcaaaagactgataagtccc 311
Query: 359 cccccaaaaggcaaaacaaaacaagaactccacaaaatatctgatga 405
||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 310 ccct-aaaaggcaaaacaaaacaagaactccacaaaatatccgatga 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 803
Length adjustment: 9
Effective length of query: 396
Effective length of database: 794
Effective search space: 314424
Effective search space used: 314424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
