BAC Information

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BAC

Clone NameMSMg01-479E12
Chromosome18 (Build37)
Map Location 40,781,202 - 40,781,441
singlet/doubletsinglet
Overlap genenone
Upstream genePabpc2, LOC100041939, Yipf5, Kctd16
Downstream geneEG225416, LOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479E12.T7 (MSMg01no479_e12.b1)MSMg01-479E12.TJ (MSMg01no479_e12.g1)
ACCAG560199AG560200
length763753
length of high quality
(start - end)
386 (323 - 708)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no479_e12.b1 PHD_FILE: MSMg01no479_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:13 2005CHROMAT_FILE: MSMg01no479_e12.g1 PHD_FILE: MSMg01no479_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACTTGCGGAATACCGAATGGCTGAGAAGTACCTGAAAAAATG
TTCAGCATCCTTAATCATCAAGGAAATGCAAATCAAAACAACACTGACAT
TCCATCTCACACCAGTCAGAATGACTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAAGAACACTTCTCCACTGTTGGTG
GGATTGCAAGTTTGTATAACCACTCTGGAAATCAGTCTGGCAGTTACTCA
GAAAATTGGACATAGTATTTTTGGAGGATCCTACAATACCTCTCCTGGGC
ATATATCCAGAAGATGTTCCAACCGGCAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATAGATTTATGAAATTCCTAGACAA
ATGGATGGACCTGGAGGGCACCATCCTGAGTGAGGTAACCAAATCACAAA
GGAACTCACATGGTATGTACTCACTGATAACTGGATATTATCCCAGAAAC
TTAGAATGCCCAAGATACAAGATACAATTTGCAAAACACATGAAACTCAA
GAAGAATGAAGACCAAGTGTGGATGCTTTGCCCCTTCTTAGAATTGGGAA
CAAAACACCCATN
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAATGATTAAAATGTTCTTTAAG
AAGATTTTTATTTGTATACCTGCTTAAATATTAAGTGATATCTATATAGC
AGAAAGTGAAGTTTTCAATATGGTTAGATTTTGGAGGTGATTCATTACTT
TTTCAGTGTAGTTTTTTAAAAGAGCTTAGGCTTGGGCTGTAGATATGTCT
CCACAGTTAGGAGTGCTTGCTGCTTCTCTAGAGAGCATGGGTTTAATTCC
TAGAGCCCCCATTAAATTTTATTAGCCACCTGTAACTCTAGTTCCCTAGG
ATCTGATGCCCTCTTCTGGCATCCAGGGGCACTGTGGGCACATAGTGCAC
ACAATACATGCAGGCAAAACAATCATACATAGAAAGTGAAATTAGATTTA
AAAAGTAATTCGGCTTGAAAAATTCAAAAGAGAAATACTCTGGCATAATG
GCACATTTATTTAGTTTTTTTGTACTTATGAGGCTGGTAGTAATTATATA
TTTTAAGAAGAGCCAGGACAGGGAAGGGAAAGAAGGAAGAGAGAGGGAGG
GAAAGGGGTTAGTTAGTCTCTGTAGGAGTTCTCTACCAGCAAGAAGTCTC
AGGGTCTAACTTCAGGAAGAAAAAAGCCATAATTCCTAGGTTTTTCACAT
ACTGGTCAATCTTTACAAACACTTGGAATGGAATCCGGAAAATACTTTTC
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_e12.g1 MSMg01no479_e12.g1 CHROMAT_FILE:
MSMg01no479_e12.g1 PHD_FILE: MSMg01no479_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:13 2005
         (241 letters)



>mm_chr18_40781002_40781642
          Length = 641

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatgattaaaatgttctttaagaagatttttatttgtatacctgcttaaatattaagt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataataattaaaatgttctttaagaagatttttatttgtatacctgcttaaatattaagt 260

                                                                       
Query: 61  gatatctatatagcagaaagtgaagttttcaatatggttagattttggaggtgattcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatctatatagcagaaagtgaagttttcaatatggttagattttggaggtgattcatt 320

                                                                       
Query: 121 actttttcagtgtagttttttaaaagagcttaggcttgggctgtagatatgtctccacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 actttttcagtgtagttttttaaaagagcttaggcttgggctgtagatatgcctccacag 380

                                                                       
Query: 181 ttaggagtgcttgctgcttctctagagagcatgggtttaattcctagagcccccattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggagtgcttgctgcttctctagagagcatgggtttaattcctagagcccccattaaa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)