BAC Information

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BAC

Clone NameMSMg01-479G10
Chromosome18 (Build37)
Map Location 60,225,545 - 60,225,879
singlet/doubletsinglet
Overlap genenone
Upstream geneA730017C20Rik, 4833446K15Rik, LOC667549
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479G10.T7 (MSMg01no479_g10.b1)MSMg01-479G10.TJ (MSMg01no479_g10.g1)
ACCAG560291AG560292
length757751
length of high quality
(start - end)
399 (323 - 721)335 (326 - 660)
definitionCHROMAT_FILE: MSMg01no479_g10.b1 PHD_FILE: MSMg01no479_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:23 2005CHROMAT_FILE: MSMg01no479_g10.g1 PHD_FILE: MSMg01no479_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTAATXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAGAGGATCCGCGG
AATTCCTATTTTCTATCAGGGATTATTAAGCTCTTTTATAGTGGGACTGC
TAGTAGGTCGTTTTCTGATAGTCAAAACTGAAATGAGGACTCTGCCAATC
TCCCAAGTGTCACCAGTTAATTGCTCTTAGATGGTAACCAGACTTTCTCC
TACTCAGAGCACATTCCAGGAGATTGTAAAACAATTAACCAAAGGCCATA
AAAAGGGAACTAATGATTTATTATAAGTTCTACGACAGAAGATAAAATAT
CGACTGGGTTTATCTATTTATAAACATTACTAATAACTTAGATATGGTTT
TAAACATTCAGTGAACCTCTGGAGCTGAGACAGATATGGATGTATATGTA
ATGGATATGCATGTAAACATTCTCTCTTGTAAATTTCCATCTCAATTTAT
GATTTGATTTTTTGTGTGAACTTGTGATGAACTTTGTAACATGTGATCAT
GTATTCTGAAAGATGTATAAGGACTGAGGGCAAAGAGAAGAGAGAAGAGA
GATTTTCTTGCTTTTCTCCACTTAGAGTAGAATTTTTTTTTCTTTTCCCC
CACGTAGGATCTTTCTGCTTTTCCCCTTAGATAGATTTCATAGGAAACTT
TTTACAATTTAGGAATACACTCCATAACCTCCTCTCTAAGTGTCTTGCTT
CTTCCTGCAACTTCTGACTTGCAGGCTCAAAGTTAGAGCCCAGCAGTTCC
TGCTGAG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGTAATAAGAAAAAGGCTTTCC
TTCATGTAACATGCAGTCCAGTGTGGCTGGTGGAGGAAAGGGGGCAATTA
GGTTTGAAAAACAAAAAAAAGTGGTCAGCGCCAGGTCCTAATGAGGCTTT
TTCTCATCTGACCTTTGCACAGAGGCCCAAAGACTTCATGTACTTCACAC
ACCACTGAGCAGAATACAAAGCCACTCACCAAGTCAGATGAGACTTATTA
GCACAAACAGAAAAAATTTTTATCTCAGAATGTATCTCCTACTGATACAG
GCTCAAGGGCATCAGCATTGAATATTAACTACACTACATCAAAACAGCAT
TAGAGATTGGTAAGACTGGGCTCCTGGTTGGACACATTTTCAGCCATTAA
CACAGAAGGATCAGAATGGCAAGCCCTGCTATGATTATTCCCCAGAGAGG
ACACAGCAGACACATGGCTTCAGCCTTCCTTTCCAGTAGCCCCACTGGCA
TTTCCAAAGGTAGAAAACACGAAGGGGAGCCTATAAAGGAAGTGTTTTTC
CTTACATGCTGTGGCTTGGCATGCTCCTGAATATAAACACTGCAGAGTGT
GCATTCGATCAGTAAAGATAAGGAGTCTTTAGATTTTCAGATCTTTGATT
GCTTGTTTCATCGGAAATTGCATCCTTCTCTTTCACATAACGCATATGTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_g10.g1 MSMg01no479_g10.g1 CHROMAT_FILE:
MSMg01no479_g10.g1 PHD_FILE: MSMg01no479_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:23 2005
         (335 letters)



>mm_chr18_60225345_60226079
          Length = 735

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatgtatctcctactgatacaggctcaagggcatcagcattgaatattaactacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatgtatctcctactgatacaggctcaagggcatcagcattgaatattaactacact 260

                                                                       
Query: 61  acatcaaaacagcattagagattggtaagactgggctcctggttggacacattttcagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatcaaaacagcattagagattggtaagactgggctcctggttggacacattttcagcc 320

                                                                       
Query: 121 attaacacagaaggatcagaatggcaagccctgctatgattattccccagagaggacaca 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 attaacacagaaggatcagaatggtaagccctgctatgattattccccagagaggacaca 380

                                                                       
Query: 181 gcagacacatggcttcagccttcctttccagtagccccactggcatttccaaaggtagaa 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gcagacacatggcttcagccttcctttccagtagacccactggcatttccaaaggtagaa 440

                                                                       
Query: 241 aacacgaaggggagcctataaaggaagtgtttttccttacatgctgtggcttggcatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacacgaaggggagcctataaaggaagtgtttttccttacatgctgtggcttggcatgct 500

                                              
Query: 301 cctgaatataaacactgcagagtgtgcattcgatc 335
           ||||||||||||||||||||| |||||||||||||
Sbjct: 501 cctgaatataaacactgcagaatgtgcattcgatc 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)