Query= MSMg01no479_l19.b1 MSMg01no479_l19.b1 CHROMAT_FILE:
MSMg01no479_l19.b1 PHD_FILE: MSMg01no479_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:50 2005
(623 letters)
>mm_chr18_40558632_40559654
Length = 1023
Score = 1158 bits (599), Expect = 0.0
Identities = 617/623 (99%)
Strand = Plus / Minus
Query: 1 cagtgctttccactcatttctccagacagctcagggacgttgctactgtttcttaaggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cagtgctttccactcatttctccagacagctcagggacgttgctactgtttcttaaggac 676
Query: 61 agagaactccaaggatcttcttctgatttctcaggctcttaatgatatgataccaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agagaactccaaggatcttcttctgatttctcaggctcttaatgatatgataccaatatt 616
Query: 121 gatgagtgacactggcatcctatctttaatttaaaaaccttaaagcctttcagtctttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gatgagtgacactggcatcctatctttaatttaaaaaccttaaagcctttcagtctttag 556
Query: 181 agaaatggacaggcaccccatctcccaccataactgtactccacagctaaaagcatacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agaaatggacaggcaccccatctcccaccataactgtactccacagctaaaagcatacat 496
Query: 241 tgcttgactgctgacagcgttcacttttcctgctctgggtaattatagactcccgctttt 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgcttgacagctgacagcgttcacttttcctgctctgggtaattatagactcccgcttta 436
Query: 301 caaccaatgcttctgtctccgtgcaaacgggaagtctttcacaatatataagcagcaatc 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 435 caaccaatgcttctgtctccgtgcaaacgggaagtctttcagaatatataagcagcaatc 376
Query: 361 atcttattatggagacctgataaaactgaaggaccagtgcaatgaaatgtattagcttgg 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 375 atcttattatggagacctgataaaactgaaggaccagtgcaatgaaatttattagcttgg 316
Query: 421 gctagtcttgcagtaactggaaaattaaatccaccagttcatcaatggcgctgtgctctg 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gctagtcttacagtaactggaaaattaaatccaccagttcatcaatggcgctgtgctctg 256
Query: 481 aggtcagaaaagagagagaagccctttcttgcttaaaacaaaattaaggaagcactgtct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aggtcagaaaagagagagaagccctttcttgcttaaaacaaaattaaggaagcactgtct 196
Query: 541 tagtcagggtttctattcctgcacaacacatcatcaccaaggaacaagttggggaggaaa 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 195 tagtcagggtttctattcctgcacaacacatcatgaccaaggaacaagttggggaggaaa 136
Query: 601 gggtttattcggcttatatttcc 623
|||||||||||||||||||||||
Sbjct: 135 gggtttattcggcttatatttcc 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_l19.g1 MSMg01no479_l19.g1 CHROMAT_FILE:
MSMg01no479_l19.g1 PHD_FILE: MSMg01no479_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:50 2005
(692 letters)
>mm_chr18_40365842_40366933
Length = 1092
Score = 1282 bits (663), Expect = 0.0
Identities = 686/695 (98%), Gaps = 6/695 (0%)
Strand = Plus / Plus
Query: 1 tcctaccattcctctgtaacatgaaaaaaaagagtaagaaagattagatattaaaagcca 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctaccattcctctgtaacatg-aaaaaaagagtaagaaagattagatattaaaagcca 259
Query: 61 aaccaattcaaaactattcactaatctaaggcaacaaagttttaatgcatgattttgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaccaattcaaaactattcactaatctaaggcaacaaagttttaatgcatgattttgcag 319
Query: 121 aagagagcacgaattgcagagctcagcatatccactgagcaattgataagcctcaagaca 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggagagcacgaattgcagagctcagcatatccactgagcaattgataagcctcaagaca 379
Query: 181 ttcttaatccatacacgtcatatatacaaacaagactatttatcaaatgcctagtgactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcttaatccatacacgtcatatatacaaacaagactatttatcaaatgcctagtgactt 439
Query: 241 aaagaataccttt--ttatttaatgtaagcagtataattattatgctcctttaagctgtc 298
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagaatac--ttagtgatttaatgtaagcagtataattattatgctcctttaagctgtc 497
Query: 299 tcctagcactattgggacctgggctggatacctttgctgaaggg-cccgcgctttgcacc 357
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 498 tcctagcactattgggacctgggctggatacctttgctgaagggccccgtgctttgcacc 557
Query: 358 gttaggatgctcaacagttttcaggacctttctccatttatacatatcagcattcccaag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gttaggatgctcaacagttttcaggacctttctccatttatacatatcagcattcccaag 617
Query: 418 ccccatgactacatatatatttactaatcatatgttttcaacaagcccaactgcttcaag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccccatgactacatatatatttactaatcatatgttttcaacaagcccaactgcttcaag 677
Query: 478 attgataatcagactatcaaacataattttaatatggacgaactgaaatcttccatgttt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 attgataatcagactatcaaacataattttaatatggacgaactgaaatcttccatgttt 737
Query: 538 taatgatcattattgctatggtttcagtaaacacaaaactagtaaaactcttatcaaagg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taatgatcattattgctatggtttcagtaaacacaaaactagtaaaactcttatcaaagg 797
Query: 598 taaaactgagattgtatagaaaacttcaaatctcattttcattgttcttcacccaaaatg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 taaaactgagattgtatagaaaacttcaaatctcattttcattgttcttcacccaaaatg 857
Query: 658 agcatagcatggttcgaatctacaggagtatggta 692
|||||||||||||||||||||||||||||||||||
Sbjct: 858 agcatagcatggttcgaatctacaggagtatggta 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
