Query= MSMg01no479_o02.b1 MSMg01no479_o02.b1 CHROMAT_FILE:
MSMg01no479_o02.b1 PHD_FILE: MSMg01no479_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:01 2005
(662 letters)
>mm_chr18_81574657_81575716
Length = 1060
Score = 1154 bits (597), Expect = 0.0
Identities = 643/661 (97%), Gaps = 8/661 (1%)
Strand = Plus / Plus
Query: 5 gaattcatcctgttcc---taagacaggatctggccgacattggggatggagaagtgtag 61
||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcatcctgt--caaataagacaggatctggccgatattggggatggagaagtgtag 262
Query: 62 aattggacacacatgtgaaagtgcatttcagataaaaatgtgctggacttgagtcagagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aattggacacacatgtgaaagtgcatttcagataaaaatgtgctggacttgagtcagagg 322
Query: 122 atgaaaagggctgactctgtgggaacagcatttctcaggtggagaacagtcatttggaag 181
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atggaaagggctgactctgtgggaacagcatttctcaggtggagaacagtcatttggaag 382
Query: 182 gtcaatacttgcttggatgtctagacgaagttaggcattatgagatatatatatttgcat 241
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 gtcaatacttgcttggatgtctagacgaagttaggcatt-tgagatatatatatttgcat 441
Query: 242 atatacaacacaccccctactcccgcccccccacacacatgtgcacataaacacatgcac 301
|| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 442 atctacaacacaccccctactcctgcccccc--cacacatgtgcacataaacacatgcac 499
Query: 302 acatccgcatgtgttagtgcacacacagaataaataagctcatcaagggggaggctttgg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acatccgcatgtgttagtgcacacacagaataaataagctcatcaagggggaggctttgg 559
Query: 362 accaaaatgggtcaagacttcagaataagcctaaggatgtcaccatagacttaggtacag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 accaaaatgggtcaagacttcagaataagcctaaggatgtcaccatagacttaggtacag 619
Query: 422 gagacagaagtggaatatagctgaggagaggagaatggaggaggcagtcagaggcagtgg 481
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 gagacagaagtggaatatagctgaggagaggagaatggagggggcagtcagaggcagtgg 679
Query: 482 tgtgaatgatgtgcgaacaggacggcccagaataatctgacacacagagggccaggggaa 541
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 tgtgaatgatgtgcgaacaggacggcccagaacaatctgacacacagagggccaggggaa 739
Query: 542 gggttccaaacagatgattcaacatgaaaatggtcatttttttcaactgggttaactggt 601
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct: 740 gggttccaaacagatgattcaacataaaaatggtcatttttttcaactgggtttactgtt 799
Query: 602 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 661
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttctttctttctttcttcctttctttctttctttctttctttctttctttctttctttct 859
Query: 662 t 662
|
Sbjct: 860 t 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space: 684600
Effective search space used: 684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_o02.g1 MSMg01no479_o02.g1 CHROMAT_FILE:
MSMg01no479_o02.g1 PHD_FILE: MSMg01no479_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:02 2005
(642 letters)
>mm_chr18_81735664_81736705
Length = 1042
Score = 1087 bits (562), Expect = 0.0
Identities = 612/634 (96%), Gaps = 13/634 (2%)
Strand = Plus / Minus
Query: 1 aagagctgacatgacctccaggatgtggtgagtccctcggatagatgtggcctgctttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aagagctgacatgacctccaggatgtggtgagtccctcggatagatgtggcctgctttct 599
Query: 61 actgcatttcaggaaatggaagttgatttagtctgcatatttggatactcctgtttcttc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 598 actgcatttcaggaaatggaagttgaattagtctgcatatttggatactcctgtttcttc 539
Query: 121 tacaaaggttccccacttcccttgctgaacttcgccttctctcctgttccctttctcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tacaaaggttccccacttcccttgctgaacttcgccttctctcctgttccctttctcaga 479
Query: 181 gccctctgcctaaaggagagcttgatgctgtttgtattcaagaaactttggatgagaacc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tccctctgcctaaaggagagcttgatgctgtttgtattcaagaaactttggatgagaacc 419
Query: 241 agctgcagcttgggtcatgataaactctgatttcgcacggggcacctcctcctcgggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agctgcagcttgggtcatgataaactctgatttcgcacggggcacctcctcctcgggaca 359
Query: 301 gaaaactgtgatgtaaatggaggaggaaagcacagccaagaccagcggtttactatgttc 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaaactgtgatgtaaatggaggaggaaagcacagccaagaccagcggtttactatgttc 299
Query: 361 ttatcaggacttagaaaagaccccaagcaggaccaatgaacgtcccacagtgtctcctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttatcaggacttagaaaagaccccaagcaggaccaatgaacgtcccacagtgtctcctca 239
Query: 421 cagagctccttcttggagatgaaatggtaaagaagtgtgaggtttgcaagcccataggaa 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 238 cagagctccttcttggagatgaaatggtaaagaagtgtgtggtttgcaagcccataggaa 179
Query: 481 gaatcgcaacatcaaccaaccagacccccgcccgaagagctccc--agggactaaacccc 538
||||| ||||||||||||||||||||| || | | ||| || ||||||||||
Sbjct: 178 gaatc---acatcaaccaaccagaccccc-cc-----accccccgcag--actaaacccc 130
Query: 539 taaccaaagagtgcacatggggggacccatggctccagttgcatatatagaagaggatgg 598
||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 129 taaccaaagagagcacatggagggacccatggctccagttgcatatatagaaaaggatgg 70
Query: 599 ccttgttggacatcaaagggaggagaggcctttg 632
||||||||||||||||||||||||||||||||||
Sbjct: 69 ccttgttggacatcaaagggaggagaggcctttg 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
