Query= MSMg01no479_p18.b1 MSMg01no479_p18.b1 CHROMAT_FILE:
MSMg01no479_p18.b1 PHD_FILE: MSMg01no479_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:10 2005
(545 letters)
>mm_chr18_42950222_42951168
Length = 947
Score = 1023 bits (529), Expect = 0.0
Identities = 542/547 (99%), Gaps = 2/547 (0%)
Strand = Plus / Minus
Query: 1 tctacccagtagtgaaggaaaagaaaggcttccagtttgatccttcccatcaccctggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tctacccagtagtgaaggaaaagaaaggcttccagtttgatccttcccatcaccctggaa 688
Query: 61 gctaaaacgggaatctcttcttttccttggtttccacaaccctgggtcagagatatgcaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gctaaaacaggaatctcttcttttccttggtttccacaaccctgggtcagagatatgcaa 628
Query: 121 atgtaagtgtgcaagctgcttttaactgatatatgaaaagggatttttgaaatgaatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atgtaagtgtgcaagctgcttttaactgatatatgaaaagggatttttgaaatgaatgtg 568
Query: 181 ttgtgattggatttctggtcagtcacccagaaggcatcacgcagctaagctctggaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttgtgattggatttctggtcagtcacccagaaggcatcacgcagctaagctctggaccca 508
Query: 241 attccactgcaaatgtataagctttggtgcctgcagccaatatagccacagacagggtgt 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 attccactgcaaatgcataagctttggtgcctgcagccaatatagccacagacagggtgt 448
Query: 301 ttcatattctcttttcatgatggagaccctaggctcaaaatggaaaag--aaaaaaaaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 447 ttcatattctcttttcatgatggagaccctaggctcaaaatggaaaagaaaaaaaaaaaa 388
Query: 359 gaggctaacatcaacctaaaagaaatctaatacaaagtaaaatttaaaagcccttgtcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaggctaacatcaacctaaaagaaatctaatacaaagtaaaatttaaaagcccttgtcca 328
Query: 419 caaccttacctgaaacacacctctttagttctaagccgcctgataaaaccagaatctgtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caaccttacctgaaacacacctctttagttctaagccgcctgataaaaccagaatctgtt 268
Query: 479 aatacataactaagctttttcaatggccttgtcactttcaaaagaactaagatgcccttt 538
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 267 aatacataactaagctttttcaatggccttgtcactttcaaaagagctaagatgcccttt 208
Query: 539 ggaaatg 545
|||||||
Sbjct: 207 ggaaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 947
Length adjustment: 10
Effective length of query: 535
Effective length of database: 937
Effective search space: 501295
Effective search space used: 501295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_p18.g1 MSMg01no479_p18.g1 CHROMAT_FILE:
MSMg01no479_p18.g1 PHD_FILE: MSMg01no479_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:10 2005
(645 letters)
>mm_chr18_42789300_42790348
Length = 1049
Score = 895 bits (463), Expect = 0.0
Identities = 569/619 (91%), Gaps = 29/619 (4%)
Strand = Plus / Plus
Query: 1 agcccatctatccaatgactcacacagtggctgttcagcttgagtctgtgacatttgtac 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcccagctatccaatgactcacacagtggctgttcagcttgagtctgtgacatttgtac 260
Query: 61 atttgatgggattttatgagacattttacagcatacacttctctgccactgttgagagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgatgggattttatgagacattttacagcatacacttctctgccactgttgagagaa 320
Query: 121 atgacctcatgagagccaaccttctttcttgttccattttatgagatggattcttgccta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 atgacctcatgagagccaaccttctttcttgttccattttatgagatggattcttgccaa 380
Query: 181 aaaaaaaaaaaaaaaaa----gcttttgagctgggagcaaagctcagggtacagcgcctg 236
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaaaaaaaaaaaaaaaagcttttgagctgggagcaaagctcagggtacagcgcctg 440
Query: 237 cctggtgtgtgttatccccaccactgctcgttctccaaagctgcaagacaaataaggtgt 296
|||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cctggtgtgtgtgagccccaccactgcttgttctccaaagctgcaagacaaataaggtgt 500
Query: 297 tttttctgctggtttatctgcccacttagtttccctagtgttctacagatatgggccagc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttctgctggtttatctgcccacttagtttccctagtgttctacagatatgggccagc 560
Query: 357 ctcaggtagaaggccttcacatctggtttttctttctttctttctttctttctttctttc 416
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 561 ctcaggtagaaggccttcacatctggtttgtctttctttctttctttctgtctttctttc 620
Query: 417 tttctttctttctttctttctttctttctttctttctttctttctttctttctttctttc 476
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 621 tttctttctttctttctttctttctttctttctttctttctttctctctttctctctttc 680
Query: 477 t-t-----tctttctttctttctttcttt-------------ctttctttctttctttct 517
| | ||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 681 tctctctctctttctttctttgtttctttgtctctctctctcctttctttctgtctttct 740
Query: 518 ttctttctttcttcctttcttccttccttccttccttccttccttccttccttccttcct 577
||||||||||||| ||||||| ||| ||| ||| ||| ||| ||| ||| ||| ||| |
Sbjct: 741 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctt--t 798
Query: 578 tccttccttccttcctttc 596
||||| || ||||||||
Sbjct: 799 tcctt--tt--ttcctttc 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 293
Number of extensions: 98
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1049
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1039
Effective search space: 659765
Effective search space used: 659765
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
