Query= MSMg01no480_g03.b1 MSMg01no480_g03.b1 CHROMAT_FILE:
MSMg01no480_g03.b1 PHD_FILE: MSMg01no480_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:40 2005
(629 letters)
>mm_chr18_43813625_43814653
Length = 1029
Score = 1151 bits (595), Expect = 0.0
Identities = 619/627 (98%), Gaps = 2/627 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattatctg-tcccataatcagcagtagattttgactagcctccccttggtcat 62
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattatctgct-ccataatcagcagtagattttgactagcctccccttggtcat 262
Query: 63 gtccctcatgccagatttagatgccatgaccgtgactttttgagaactccttctccaagt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtccctcatgccagatttagatgccatgaccgtgactttttgagaactccttctccaagt 322
Query: 123 caaaacgaacttctcgccagacttctcacatttggtttaaatcagagttaaatgccagcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caaaacgaacttctcgccagacttctcacatttggtttaaatcagagttaaatgccagcc 382
Query: 183 tatcttttccaagccagttgcctcagactgtctcttctggatgtgttgcaaacaaacata 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatcttttccaagccagttgcctcagactgtctcttctggatgtgttgcaaacaaacata 442
Query: 243 accccagctgtttttccaccactgccctctgctctcccatttccatgttctgcatacaca 302
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 accccagttgtttttccaccactgccctctgctctcccgtttccatgttctgcatacaca 502
Query: 303 ctatttgtcctgtctcaaacacttccgtgtgaacactctcttcacctgggcttctataac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctatttgtcctgtctcaaacacttccgtgtgaacactctcttcacctgggcttctataac 562
Query: 363 tgtgtgcttgcaatcctatatgtttccccaagatgcagctataacttacttcattggaga 422
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgtgtgcttgctctcctatatgtttccccaagatgcagctataacttacttcattggaga 622
Query: 423 actgcttcctctgtactttctagcagtaatcaggaccatttactggatgctggcacttcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 actgcttcctctgtactttctagcagtaatcaggaccatttactggatgctggcacttcc 682
Query: 483 caagaactgtgcaatagatttcatagatttacttagaaagtgagaaagcacagtataatg 542
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cgagaactgtgcaatagatttcatagatttacttagaaagtgagaaagcacagtataatg 742
Query: 543 tacagcctgcaggatgccagcattcaaatcctggctccaccacagattatctgtaagcac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 743 tacagcctgcaggatgccagcattcaaatcctggctccaccacagattatctgcaagcac 802
Query: 603 atagatatttatgttccgggcttttgt 629
|||||||||||||||||||||||||||
Sbjct: 803 atagatatttatgttccgggcttttgt 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_g03.g1 MSMg01no480_g03.g1 CHROMAT_FILE:
MSMg01no480_g03.g1 PHD_FILE: MSMg01no480_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:40 2005
(648 letters)
>mm_chr18_43862039_43863086
Length = 1048
Score = 1178 bits (609), Expect = 0.0
Identities = 639/649 (98%), Gaps = 2/649 (0%)
Strand = Plus / Minus
Query: 1 ttcacagaaatctcttattttagggactgactcatgaaacttcttcccaggtagctgtgt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 815 ttcacagaaatctcttattttagggactgactcgtgaaacttcttcccaggtagctgtgt 756
Query: 61 tagacttaaagggggtttcaaaagataatgctttcttatgtcttgtactctgcagtccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tagacttaaagggggtttcaaaagataatgctttcttatgtcttgtactctgcagtccac 696
Query: 121 tgtcattaaacatgaatgctgagtgtgcagaaatggcaagaaataagggcatcatttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 695 tgtcattaaacatgaatgctgagtgtgcagaaatggcaagaaataagagcatcatttgaa 636
Query: 181 gtaaattgttctgttcttttttcctaggtatccaattatcagggcttgagaaaattgggg 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 635 gtaaattgttctgttcttttttcttaggtatccaattatcagggcttgagaaaattgggg 576
Query: 241 gacaataaagagacccatttaaagttgcaatgtgtaattgtagtttttctaattctactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gacaataaagagacccatttaaagttgcaatgtgtaattgtagtttttctaattctactt 516
Query: 301 cttaaaatcggacttgttgaagctcgcctctgtttcacaagttcaacagagagcacacag 360
|||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 515 cttaaaattgaacttgttgaagctcgcctctgtttcacaagttcaacagagagcgcacag 456
Query: 361 tgctgctcttctttcccacatgatgatgttcttccagaaaacagaaactatacaa-agta 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 455 tgctgctcttctttcccacatgatgatgttcttccagaaaacagaaactata-aagagta 397
Query: 420 ctgtaaggttggtgacagagaactctggttatactgttaggaagggatggcatctctgta 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 396 ctgtaaggttggtgacagagaactctggttatactgttaagaagggatggcatctctgta 337
Query: 480 acaaaagcatcatgtggcatctaataaagtattcaagtgataattaaatggtgtctgata 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 336 acaaaagcatcatgtggcatctaataaagtactcaagtgataattaaatggtgtctgata 277
Query: 540 cccttccttagggtagcccatatttgaatattatagttgatcccagaagtattgacttga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cccttccttagggtagcccatatttgaatattatagttgatcccagaagtattgacttga 217
Query: 600 aaatttttctgagtattttatagcagccttatttataatagccagaagc 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aaatttttctgagtattttatagcagccttatttataatagccagaagc 168
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
