BAC Information

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BAC

Clone NameMSMg01-480I17
Chromosome18 (Build37)
Map Location 27,269,572 - 27,269,725
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480I17.T7 (MSMg01no480_i17.b1)MSMg01-480I17.TJ (MSMg01no480_i17.g1)
ACCAG561160AG561161
length718706
length of high quality
(start - end)
575 (81 - 655)238 (78 - 315)
definitionCHROMAT_FILE: MSMg01no480_i17.b1 PHD_FILE: MSMg01no480_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:53 2005CHROMAT_FILE: MSMg01no480_i17.g1 PHD_FILE: MSMg01no480_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGAGGC
GCGGAATTCTCACCTGTTGCCAACTGAATGGCTGAGAAGCACCTGAAAAA
ATGTTCAGCATCCTTAATTATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTATAGCCACTCTGGAAATCAGTCTGGTGGTTCC
TCAGAAAATTGGACATTGGAGGAACTCTAAATACCTCTCCTGGGAATATA
TTCAGAAGATGTTCCAACTGGTAAGAAGGACACATGTTCTACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACACAGATTCCCC
TCAACAGACGTATGGATACAAAAAAATGTGGTACATTTACACAATTTACT
ACTCAGCTATTAAAAAGAATGAGTTTATGAAATTCCTAGGTAAATGGTTG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTC
AGATGATATGTACTCACTGATATGTGGATATTAGCCCAGAAACTTTGAAT
ACCCAAGATACAAGATACAATTTGCCAAACACATGAAACTCAAGAAGAAC
AAAGACCCTTCTTAGAAN
TTGGGCGATGAATAGGGGAGGCCTGGAGGCCGCCTGTTTCACAACATGGG
GTGAACTATAGAATTTCAACAGAATTCAGGTTGTCTCTTGGAATATACCT
TGCATGAGTTTTATGTCTTCTTGTATATCTCTCTGGGAATGTCCTTGTGG
TGCCTGCTCCTTGCCTGTAGGTCCAGGCGAGAGGAGAGAGGTCTTGGGGC
TGAGCTGGTTAATGAGTGTTGATGGCCCAAAGACGGAGTTTGGAGCTGAT
ATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCAT
AATCAGCATCCAAACTCTTTTCCATTGCATACACTAGCAAGATTTTATTG
AAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCA
AATACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTC
CCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAAC
CCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGA
CTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA
GAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGTGTGAAC
ACCAGGGCCCAAAAAGGGGGATTGGGTGGGCCAGGGGAGTGTGGGTGGTG
TGTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_i17.g1 MSMg01no480_i17.g1 CHROMAT_FILE:
MSMg01no480_i17.g1 PHD_FILE: MSMg01no480_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:53 2005
         (238 letters)



>mm_chr18_27269376_27270013
          Length = 638

 Score =  275 bits (142), Expect = 2e-78
 Identities = 151/154 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttgtctcttggaatataccttgcatgagttttatgtcttcttgtatatctctctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aggttgtctcttggaatataccttgcatgagttttatgtcttcttgtatatctctctggg 291

                                                                       
Query: 61  aatgtccttgtggtgcctgctccttgcctgtaggtccaggcgagaggagagaggtcttgg 120
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 290 aatgtccttgtggtgcctgctccttgccagcaggtccaggcgagaggagagaggtcttgg 231

                                             
Query: 121 ggctgagctggttaatgagtgttgatggcccaaa 154
           |||||||||||||| |||||||||||||||||||
Sbjct: 230 ggctgagctggttagtgagtgttgatggcccaaa 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)