NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAATCG
GCGGAATTCATTTGCCTTTCCAGAGCTAGGTTTAAAAGCATGCACTAGCA
TACTCAGCCTAGTAAATAATTTTTTTAACCATTAAGTCCATGCTATATCG
ATATTCTCTCTCTCTATCACCATCATTTACTTATCTACCTACCCACCAGC
CATGTATGAGCTAACTTGTGTTAATGAAATACCCTCTAGCTAAAAAAAAC
TTTACCAAAACAGTATGGTCATGCAAATGTCTACCTCAAAATCTAACCTG
TCAAAAATCAAAATACACTGTTTCATATATACACACCCAGAAGAGGGCAT
CAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTCGCTGGGAATTG
AACTCAATCTCCAGAAGCAGCCAGTGGCGCTCTTAACCACTCAGTCATCT
CTCCAGCCCCCCAAATTAGTTACTTTAAACAAGATGTTTACCTCTAACAT
TAGCACTCAAAGGTTAATAAACTTCAGTGGTAGAAAATGTGCAAAGTCCT
TGGTTGAATTCTCTATTGATTATTTAATTGATGAAAAATTTCTGTAACTA
ATTCAATAAGCCAGTTAGTTTTTCCTGTATGAAAATCTTTCATAGCTATT
ATTCAGTATTTCCAAATGTCAGACTGCTTTTCTCCTCTACAGACCTTGGC
TTGCAGTTGCCCAGATCTCTN

TGAGCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGACTCTATATATAAAACTT
TTGACAATTTGTGGGAAATTATGTAAAATAGTGATGCTTGCTAGTTGAGT
TTAGCATCTCTGCAAAGAATGAGCTCCACAAAAAAAACAAAAACAAAACC
AACAACAATAACAACAACAACAACAACAACAAACAACAAATGTCTAGCAT
CACAGGATACAGTGAATGTGATACAGGAAAAGAATGAAGTCAGTGATACA
CATGAACGGCTCCAGACAAGCAGTTTTTTTTTTTCTAAGTACGCCCTGGA
AGAGACTCTTCTCTCCAGCGTCCACAGAGCTCAGCTGCATGAGAGACTAG
AGCCTGGTTTACAGGTGCGAGTGGAAACTGCAGCCCTGCAGCCCTCTGAG
CAGCCTTAAAAGGCGCCAGTGGAAGAAAGGCCAGTGCTGGACTAGCAGGA
CCACAGCCTAGACGCCACTCCAATACAGGTCTCTTTGGGATGTATTTTTA
ACGTATATTATATATTCTTTCTTCCTTTCTTCCTTCTTTCTTTTTCTCTT
TCTTTCTCTTCCTTCCTTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG
TGCTTTTCCTCTAAAGAACCTTAATGTAAACATTAAAATTCTTTAAAATT
CTTTATTTAATCCCCAAAA

Query= MSMg01no480_l23.b1 MSMg01no480_l23.b1 CHROMAT_FILE:
MSMg01no480_l23.b1 PHD_FILE: MSMg01no480_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:09 2005
         (640 letters)



>mm_chr18_63843598_63844633
          Length = 1036

 Score = 1162 bits (601), Expect = 0.0
 Identities = 629/641 (98%), Gaps = 6/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggtttaaaagcatgcactagcatactcagcctagtaaataatttttttaaccattaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggtttaaaagcatgcactagcatactcagcctagtaaataatttttttaaccattaag 260

                                                                       
Query: 61  tccatgctatatcgatattctctctctctatcaccatcatttacttatctacctacccac 120
           ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatgctatatcgatat----tctctctatcaccatcatttacttatctacctacccac 316

                                                                       
Query: 121 cagccatgtatgagctaacttgtgttaatgaaataccctctagctaaaaaaaactttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cagccatgtatgagctaacttgtgttaatgaaataccctctagctaaaaaaaactttacc 376

                                                                       
Query: 181 aaaacagtatggtcatgcaaatgtctacctcaaaatctaacctgtcaaaaatcaaaatac 240
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 aaaacagtatcgtcatgcaaatgtctacctcaaaatctgacctgtcaaaaatcaaaatac 436

                                                                       
Query: 241 actgtttcatatatacacacccagaagagggcatcagatcccattacagatggttgtgag 300
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 actgtttcagagatacacacccagaagagggcatcagatcccattacagatggttgtgag 496

                                                                       
Query: 301 ccaccatgtggtcgctgggaattgaactcaatctccaga--agcagccagtggcgctctt 358
           |||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||
Sbjct: 497 ccaccatgtggtcgctgggaattgaactcaatctccagaagagcagccagtggcactctt 556

                                                                       
Query: 359 aaccactcagtcatctctccagccccccaaattagttactttaaacaagatgtttacctc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaccactcagtcatctctccagccccccaaattagttactttaaacaagatgtttacctc 616

                                                                       
Query: 419 taacattagcactcaaaggttaataaacttcagtggtagaaaatgtgcaaagtccttggt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taacattagcactcaaaggttaataaacttcagtggtagaaaatgtgcaaagtccttggt 676

                                                                       
Query: 479 tgaattctctattgattatttaattgatgaaaaatttctgtaactaattcaataagccag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgaattctctattgattatttaattgatgaaaaatttctgtaactaattcaataagccag 736

                                                                       
Query: 539 ttagtttttcctgtatgaaaatctttcatagctattattcagtatttccaaatgtcagac 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttagtttttcctgtatgaaaatctttcatagctattattcagtatttccaaatgtcagac 796

                                                    
Query: 599 tgcttttctcctctacagaccttggcttgcagttgcccaga 639
           |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 797 tgcttttctcctctacagaccttgacttgcagttgcccaga 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1036
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1026
Effective search space:   646380
Effective search space used:   646380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)