BAC Information

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BAC

Clone NameMSMg01-481H05
Chromosome18 (Build37)
Map Location 32,858,796 - 32,859,424
singlet/doubletsinglet
Overlap geneLOC100041170
Upstream geneSap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160
Downstream geneTslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481H05.T7 (MSMg01no481_h05.b1)MSMg01-481H05.TJ (MSMg01no481_h05.g1)
ACCAG561854AG561855
length7741,095
length of high quality
(start - end)
608 (38 - 645)---
definitionCHROMAT_FILE: MSMg01no481_h05.b1 PHD_FILE: MSMg01no481_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:05 2005CHROMAT_FILE: MSMg01no481_h05.g1 PHD_FILE: MSMg01no481_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAT
AAAAGATTGCGGTGTGTCAGGGAAGTCTATAACTATAAAAGTGATTAGAG
CGGGCCTCATTAAGGCACAGATAACATCAGAACAGAGCTTTCAAAGGCAT
AATCATATGACACAAGCATTTGTAATAGAAGGAATGGCAAGTTCTAGGAC
TCTGAGACTAATGGATGTCTGGCAGGTTTGAGACCTAGCAAGAAAGACAA
GGGTGGCTGGAGTACCAACTCCACCTCCACCTCCTCCACCTCCTCCACCA
CCTCCACCTCCTCCACCTCCTCCACCACCTCCACCACCTCCACCACCTCC
ACCACCTCCACCTCCTCCACCTCCTCCACCTCCTCCACCACCTCCACCTC
CTCCACCACCTCCACCTCCTCCACCTCCTCCACCTCCTCCACCACCTCCA
CCTCCTCCACCTCCTCCACCTCCTCCACCTCCTCCACCACCTCCACCACC
TCCACCTCCTCCACCTCCTCCACCACCTCCTCCACCTCCTCTACCACCTC
CACCACCTCCACCACCTCCACCTCCTCCACCTCCTCCACCTCCTCCACCT
CCTCCACCTCCTCCACCACCTCCATCACCTCCACCACCTCCACCTCCTCC
TCCACCACCTCCACCACCCTCCACATCTTCCACTTCCTCCACCTCCTCCA
CCCACTTCATCACCTCCATCACCTCCAACTCCTCCACTTCCTTCAACTTC
TCCACCACCTCAACCTTCTCCTCT
GAATGAATTCTTGTATAGAAAAAATATATAACCACCAAAATAGAGGAACT
ATATATCAGAGACAACATCACTAATCCCCATCCACTAACACCCTCAACTG
ATTTACAGGAGCAACAACCCACTAGAATATTCTCTAACTCCCTCACCATC
CGCCATCCCTGAATAAAACAATTATCTACGTGTACTATCCGTGGGGCCGC
GCGTGGCGGCTGTGGGGTTCCCGCGGGTGCCCGGGTGGTGTCTGACGGCC
TCACGCGTTGTGTTCCGCTCCGTCGTGGCCTGACTAGCGCTGTCATGCGC
CGGTCTGTCATTAGTGGTAGGAGCGCTGGGTGGCGGCGCGCCGTCGCCCG
GCTTGCGCGTGAGCTCACGAACGCTGAGGCGCAGCGCCACGGACCTATCG
GCGGCAGTGGGCGCGCGCGCGCGTGTGGGTCGTAGTCTGAGACCGTCTCG
GAGATCATAGAGGGAAGCTAGGTGAAGCTGTACTCACTAATCGATTCGCG
CAAATAATCCTCAGGCGCACTATATAGTGACTAGATCAATATCTCTCTCA
AACAGTGTCGCGCTACCCCTGCATATATCCGAGCGTCAATGTCGCTACGA
CCGCAGAATCAACGCGTTGTGTGCGCAGGTGGAGCACATTGAGCGGTGAG
TGCGCGACGCTCTGTACTATCACCGCGCTATTACTATAACCATTCCTTCG
TTCTTAGCTGCGCTGGAGAGGTCGGCATGTCATGCAACGAGTGTCGTGCG
GCTGTGTTCACCGTCCGACGCCGGCAGCCTTGTATGACTAATGATATGAG
CGAAGCCGAACTGGCGGTGTGTTGATATTGGTGGCCGATTGTGTAAAGGG
TCGCAGCCTACCCTATGACCCATATTAGCTAGTCCTCGCTTAGTATCGCT
ATGATCGCCGCGCGCTCACTGAGTGTCACCCGACGAGCGACTTCACTGTG
TGTATCGAACGCGTCATCCGCCGCGCGTACATATCGCCGTGTCACGCTGT
GATTCTGTCCCACGCAGCGATCATACTGCCGTCGTCCTGCTATGCACCAG
AGCCGTTAACCACACGCTGCGTACCGGGAGGCGAGCATCACACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_h05.b1 MSMg01no481_h05.b1 CHROMAT_FILE:
MSMg01no481_h05.b1 PHD_FILE: MSMg01no481_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:05 2005
         (608 letters)



>mm_chr18_32858592_32859597
          Length = 1006

 Score =  940 bits (486), Expect = 0.0
 Identities = 584/634 (92%), Gaps = 36/634 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataaaagattgcggtgtgtcagggaagtctataactataaaagtgattagagc 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataaaagaatggggtgtgtcagggaagtctataactataaaagtgattagagc 264

                                                                       
Query: 65  gggcctcattaaggcacagataacatcagaacagagctttcaaaggcataatcatatgac 124
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 265 gggcctcattaaggcacagataacatcagaacag--ctttcaaaggcataatcatatgac 322

                                                                       
Query: 125 ac-aagcatttgtaatagaaggaatggcaagttctaggactctgagactaatggatgtct 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acgaagcatttgtaatagaaggaatggcaagttctaggactctgagactaatggatgtct 382

                                                                       
Query: 184 ggcaggtttgagacctagcaagaaagacaagggtggctggagtaccaactccacctccac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggcaggtttgagacctagcaagaaagacaagggtggctggagtaccaactccacctccac 442

                                                                       
Query: 244 ctcctccacctcctccaccacctccacctcctccacctcctccaccacctccaccacctc 303
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 443 ctcctccacctcctccaccacctccaccacctccaccacctccaccacctccacctcctc 502

                                                                       
Query: 304 cacc------acctcc---accacctccacctcctccacctcctccacctcctccaccac 354
           ||||      ||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cacctcctccacctcctccaccacctccacctcctccacctcctccacctcctccaccac 562

                                                                       
Query: 355 ctccacctcctccaccacctccacctcctccacctcctccacctcctccaccacctccac 414
           ||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct: 563 ctccaccacctccaccacctccacctcctcctccacctccaccacctccaccacctccac 622

                                                                       
Query: 415 ctcctccacctcctccacc---tcctccacctcc------tccaccacctccaccacctc 465
           |||||||||||||||||||   ||||||||||||      ||||||||||||||||||||
Sbjct: 623 ctcctccacctcctccaccacctcctccacctccaccacctccaccacctccaccacctc 682

                                                                       
Query: 466 cacctcctccacctcctccacc---acc---tcc------tccacctcctctaccacctc 513
           |||| |||||||||||||||||   |||   |||      ||||||||||| ||||||||
Sbjct: 683 caccacctccacctcctccacctccaccacttccaccacctccacctcctccaccacctc 742

                                                                       
Query: 514 caccacctccaccacctccacctcctccacctcctccacctcctccacctcctccacctc 573
           |||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |
Sbjct: 743 caccacctccaccacctccacctcctccacctcctccacctcc---acctcctccaccac 799

                                             
Query: 574 ctccaccacctccatcacctccaccacctccacc 607
           |||| ||||||||| |||||||||||||||||||
Sbjct: 800 ctcctccacctccaccacctccaccacctccacc 833



 Score =  487 bits (252), Expect = e-142
 Identities = 326/358 (91%), Gaps = 15/358 (4%)
 Strand = Plus / Plus

                                                                        
Query: 234  ccacctccacctcctccacctcctccaccacctccacctcctccacctcc------tcca 287
            ||||||||||| |||||||| |||||||||||||||||||||||||||||      ||||
Sbjct: 658  ccacctccaccacctccaccacctccaccacctccacctcctccacctccaccacttcca 717

                                                                        
Query: 288  ccacctccaccacctccaccacctccaccacctccacctcctccacctcctccacctcct 347
            ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 718  ccacctccacctcctccaccacctccaccacctccaccacctccacctcctccacctcct 777

                                                                        
Query: 348  ccaccacctccacctcctccaccacctccacctcctccacctcctccacctcctccacca 407
            |||||   ||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 778  ccacc---tccacctcctccaccacctcctccacctccaccacctccaccacctccacca 834

                                                                        
Query: 408  cctccacctcctccacctcctccacctcctccacctcctccaccacctccaccacctcca 467
            |||||||||||||||||||| ||||||||   |||||||||||| |||||||||||||||
Sbjct: 835  cctccacctcctccacctccaccacctcc---acctcctccacctcctccaccacctcca 891

                                                                        
Query: 468  cctcctccacctcctccaccacctcctccacctcctctaccacctccaccacctccacca 527
            || |||||||||||||||||||||||   |||||||| ||||||||||||||||||||||
Sbjct: 892  ccacctccacctcctccaccacctcc---acctcctccaccacctccaccacctccacca 948

                                                                      
Query: 528  cctccacctcctccacctcctccacctcctccacctcctccacctcctccaccacctc 585
            ||||| || |||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 949  cctcctccacctccaccacctccaccacctccacctcctccaccacctccaccacctc 1006



 Score =  393 bits (203), Expect = e-113
 Identities = 271/299 (90%), Gaps = 12/299 (4%)
 Strand = Plus / Plus

                                                                        
Query: 227  accaactcca---cctccacctcctccacctcctccaccacctccacctcctccacctcc 283
            |||| |||||   |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 717  accacctccacctcctccaccacctccaccacctccaccacctccacctcctccacctcc 776

                                                                        
Query: 284  tccaccacctccaccacctccaccacctccaccacctccacctcctccacctcctccacc 343
            ||||||   |||||| |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 777  tccacc---tccacctcctccaccacctcctccacctccaccacctccaccacctccacc 833

                                                                        
Query: 344  tcctccaccacctccacctcctccaccacctccacctcctccacctcctccacctcctcc 403
             |||||||| |||||||||||   |||||||||||||||||||||||||||||| |||||
Sbjct: 834  acctccacctcctccacctcc---accacctccacctcctccacctcctccaccacctcc 890

                                                                        
Query: 404  accacctccacctcctccacctcctccacctcctccacctcctccaccacctccaccacc 463
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 891  accacctccacctcctccaccacctccacctcctccaccacctccaccacctccaccacc 950

                                                                       
Query: 464  tccacctcctccacctcctccaccacctcctccacctcctctaccacctccaccacctc 522
            ||| || |||||||| ||||||||||||||   |||||||| |||||||||||||||||
Sbjct: 951  tcctccacctccaccacctccaccacctcc---acctcctccaccacctccaccacctc 1006



 Score =  172 bits (89), Expect = 6e-47
 Identities = 110/117 (94%)
 Strand = Plus / Plus

                                                                       
Query: 492 cctccacctcctctaccacctccaccacctccaccacctccacctcctccacctcctcca 551
           ||||||||||||| ||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 436 cctccacctcctccacctcctccaccacctccaccacctccaccacctccaccacctcca 495

                                                                    
Query: 552 cctcctccacctcctccacctcctccaccacctccatcacctccaccacctccacct 608
           |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct: 496 cctcctccacctcctccacctcctccaccacctccacctcctccacctcctccacct 552



 Score =  116 bits (60), Expect = 4e-30
 Identities = 78/84 (92%)
 Strand = Plus / Plus

                                                                       
Query: 525 ccacctccacctcctccacctcctccacctcctccacctcctccacctcctccaccacct 584
           ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 433 ccacctccacctcctccacctcctccaccacctccaccacctccaccacctccaccacct 492

                                   
Query: 585 ccatcacctccaccacctccacct 608
           ||| | |||||||| |||||||||
Sbjct: 493 ccacctcctccacctcctccacct 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 791
Number of extensions: 92
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 19
Length of query: 608
Length of database: 1006
Length adjustment: 10
Effective length of query: 598
Effective length of database: 996
Effective search space:   595608
Effective search space used:   595608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)