CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTCGCAGTTCCTGCTTTTTTTTTTTTTTTTTTTTGCTTTTTGCT
TTTTCGAGACAGGAAGTCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG
AACTCACTGTGTAGACCAGGCTGGCCTCGAACTGAGAAATCCGCCTGCCT
CTGCCTCCCAAGTGCTCGGATTAAAGGTGTGCGCCACCACTGCCCAGCTT
GTTGCATCTTTTGAATGGAGAGATATCTATCATGAGTGGAGAATGCCAGG
CCTGAGCTTCTGGTGGCTGTGGCAGTGTGTCACTAGTGTGTGGATTGTCC
ACTTGACTGGTGTCACTTGGGAAAGTTGATGCCTGTCTCAATGGCACAGG
AGTGGGTTCCCTCCTGTCCCTGTGTTAGAGGTAGAAACAGTCCTTGTAGG
TAAGTTTTCCTCACATCTGTGTTACCTGTCTCATTGCTCTGTTTCTACCT
CACTGACTCAACACCATAGTTGAGGCTGTCCTACACCATTCTCTTCATGC
CAGATGTAGCTCTTTGTGGAACATCTCTGTCCCAGTCCCAGGCAAGCACA
AGCTGCCTGCCTGCCACAGGCCTGCTTTGGCATTCTGCAGGCTTGTATCT
CCTTCCTGCAGTCAGAGTTGCTGGGAGCTAAAGAGAGATTGTATCTGTGG
GGACAGGGGATGCTTGTTTGGAGCCTAACCAGGAGGAGCAAGGACTGGGC
TATAAAC

AACCCTGGCNNCCCCCTGGCCTTCANAATCAGGGGACCTATANAAGGGCC
CGCGAAATGCCCGGCGGGGGCGCCCCGGGGGGGCGCGCGGGGCGGGGGCT
TGGGGGCGGGGGCGCCTCTAAAAATTCCCCCCTCCCGAAAAAAAATTTTC
CCCCCCTTTTTTTTTTTTNNNNTAAATCCCCCCCCAACAAAATTTTCTTC
CCCAAAAAAAAAACACCNNNNNNNNNNTGCGGCCCCCCCCCCCCCCCCAA
AAAAAAAAAAAAAACCCCCCCCCCCCCCCCCTTTTTTTTTATAAAAAAAA
AAAAAAAAAACCCACCCCCCCCCCCCTCTCCCCNNAAAACAAACCCCCCC
CNTACTNNNTTTTTTTTTTCCCCCCCCCCCCCCCTTCTTTTTAAAAAAAA
AAAAAAAAAAAAAAAAACNCCNCTTTTTATATTCCCCCCCCCCCCCCCCC
CCCCCCCAAAAAAAAAAAAAAAAAACACACCCCCCCCCCCCCCCCCCCTC
CCACCCAGAAACCCAACACCAAANATATTTTTTATTTTTTTCCTTTTTCC
TTTCCCCCCCCCCCCNCCCCCACCCCCCTCCTTCCCCCCCTTCCCCCCCC
CACCCCNCTCCCCCCCCCAACCAANCNCCCCCCNCCCCCCNCCCCNCCCC
CNCCCCCCCCCCCAACCCCCTCCTCCCCCCCCCCCCNCTCCCCCCCCCCC
NNCCNCCNTCCTCCCCTCCCCCCCCACTCCCACCCCATTCCCCACCTCCC
CCCCCNCCACCCCCCCNNACCCACCCCACCCCCCANANCCTCCTCCCCCC
CACCCTCCCCCTCCCCCCCACCCCCCCCCCTCCCCACACCCCCTACCCAC
CCCCCCCTCCTCCCCACTTCTCCTCTTCGTGTGGTGGGGTGG

Query= MSMg01no481_i23.b1 MSMg01no481_i23.b1 CHROMAT_FILE:
MSMg01no481_i23.b1 PHD_FILE: MSMg01no481_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:14 2005
         (507 letters)



>mm_chr18_12920106_12921012
          Length = 907

 Score =  870 bits (450), Expect = 0.0
 Identities = 488/510 (95%), Gaps = 18/510 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcctcgcag--ttcctgc----ttttttttttttttttttttgctttttgctt 57
           ||||||||||||||||  ||  |||    |||||||||||||||||||||||||||||||
Sbjct: 903 ggaattctcctcgcagcttt--tgcttttttttttttttttttttttttgctttttgctt 846

                                                                       
Query: 58  tttcgagacaggaagtcagggtttctctgtgtagccctggctgtcctggaactcactgtg 117
           |||||||||||||||          |||||||||||||||||||||||||||||||||||
Sbjct: 845 tttcgagacaggaag----------tctgtgtagccctggctgtcctggaactcactgtg 796

                                                                       
Query: 118 tagaccaggctggcctcgaactgagaaatccgcctgcctctgcctcccaagtgctcggat 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tagaccaggctggcctcgaactgagaaatccgcctgcctctgcctcccaagtgctcggat 736

                                                                       
Query: 178 taaaggtgtgcgccaccactgcccagcttgttgcatcttttgaatggagagatatctatc 237
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 taaaggtgtgctccaccactgcccagcttgttgcatcttttgaatggagagatatctatc 676

                                                                       
Query: 238 atgagtggagaatgccaggcctgagcttctggtggctgtggcagtgtgtcactagtgtgt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atgagtggagaatgccaggcctgagcttctggtggctgtggcagtgtgtcactagtgtgt 616

                                                                       
Query: 298 ggattgtccacttgactggtgtcacttgggaaagttgatgcctgtctcaatggcacagga 357
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggattctccacttgactggtgtcacttgggaaagttgatgcctgtctcaatggcacagga 556

                                                                       
Query: 358 gtgggttccctcctgtccctgtgttagaggtagaaacagtccttgtaggtaagttttcct 417
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgggttccctcctgtccctatgttagaggtagaaacagtccttgtaggtaagttttcct 496

                                                                       
Query: 418 cacatctgtgttacctgtctcattgctctgtttctacctcactgactcaacaccatagtt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cacatctgtgttacctgtctcattgctctgtttctacctcactgactcaacaccatagtt 436

                                         
Query: 478 gaggctgtcctacaccattctcttcatgcc 507
           ||||||||||||||||||||||||||||||
Sbjct: 435 gaggctgtcctacaccattctcttcatgcc 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)