Query= MSMg01no481_j23.b1 MSMg01no481_j23.b1 CHROMAT_FILE:
MSMg01no481_j23.b1 PHD_FILE: MSMg01no481_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:19 2005
(284 letters)
>mm_chr18_59804434_59805117
Length = 684
Score = 451 bits (233), Expect = e-131
Identities = 269/281 (95%), Gaps = 1/281 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatgttgaattcctgagcaaggtcctagaaagtatgtctacatcactgactcca 64
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 331 gaattcaatgttgaataagtgagcaaggtcctagaaagtatgtctgcatcactgactcca 272
Query: 65 ggcagggaatttcacaaaggaggagatggaaggcaggctggaggcagaggacaaggaagg 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggcagtgaatttcacaaaggaggagatggaaggcaggctggaggcagaggacaaggaagg 212
Query: 125 atacaatgaaagaaaagagaaaggaaggaaggaagaaaaaagagaagagggaagaaataa 184
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 211 atacaatgaaaggaaagagaaagaaaggaaggaagaaaaaagagaagagggaagaaataa 152
Query: 185 agaaaggaaggaaggaaagaaaagaaaggaaaaaagaa-gggggaggtaaggaaggaaag 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 151 agaaaggaaggaaggaaagaaaagaaaggaaaaaagaaggggggaggtaaggaaggaaag 92
Query: 244 aggagaggaaaggaaaggaaaggaaagggaagggaaggaaa 284
|||| | ||||||||||||||||||||| |||| |||||||
Sbjct: 91 aggaaaagaaaggaaaggaaaggaaaggaaaggaaaggaaa 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no481_j23.g1 MSMg01no481_j23.g1 CHROMAT_FILE:
MSMg01no481_j23.g1 PHD_FILE: MSMg01no481_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:19 2005
(612 letters)
>mm_chr18_59619668_59620680
Length = 1013
Score = 1054 bits (545), Expect = 0.0
Identities = 595/613 (97%), Gaps = 4/613 (0%)
Strand = Plus / Plus
Query: 1 cactaaggaccaatcact-aaagatatgggcctatgtgtaacatcttcattcaaatatcc 59
|||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cactaaggaccaatcattcaaagatatgggcctatgggtaacatcttcattcaaatatcc 260
Query: 60 acacacatctgcattccgagagtagggtagatgcactaaagactttgcaaatacatcacg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 261 acacacatctgcattccgagagtagggtagatgcactaaagactttgcaaatatatcatg 320
Query: 120 tggggccaaaagtcctgaattctttatggtatctatgtgaatgaacgtgtttcccttcag 179
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct: 321 tggggccaaaagtcctgaattctttatggtatctatgtgaatgaatgtgtgtctcttcag 380
Query: 180 aattgaagtcaagctattgttaatagaatgctggcagcatattaacctgctgagtgaaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgaagtcaagctattgttaatagaatgctggcagcatattaacctgctgagtgaaaa 440
Query: 240 gtttgagggaaaaacatcagaatggagtaagaatgaaactcctatcagcctgatttaggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttgagggaaaaacatcagaatggagtaagaatgaaactcctatcagcctgatttaggt 500
Query: 300 aacaggttctggaccaaggctttttggagtctgacatcagcccatatacttttgccatac 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaggttctggatcaaggctttttggagtctgacatcagcccatatacttttgccatac 560
Query: 360 ttaagcataagacaattttggggaaaaaaaggttttagatagcaattacctcagctttgt 419
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ttaagcataagacaattttgggaaaaaaaaggttttagatagcaattaactcagctttgt 620
Query: 420 aaatacaacaacttagaacatatatgcttacattgaagttctttacaaagtacagatgac 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatacaac---ttagaacatatatgcttacattgaagttctttacaaagtacagatgac 677
Query: 480 ttcttttgtaagatgagttgctgttgacttagaaacaatgctcaagataagagtgtaggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttcttttgtaagatgagttgctgttgacttagaaacaatgctcaagataagagtgtaggg 737
Query: 540 agaacgaccacagcaaacacagtatctggccttagataacctagaagatacttaggctgt 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 738 agaacgaccatggcaaacacagtatctggccttagataacctagaagatacttaggctat 797
Query: 600 aatatagtaagaa 612
|||| ||||||||
Sbjct: 798 aatagagtaagaa 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
