Query= MSMg01no482_e19.b1 MSMg01no482_e19.b1 CHROMAT_FILE:
MSMg01no482_e19.b1 PHD_FILE: MSMg01no482_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:11 2005
(583 letters)
>mm_chr18_12737849_12738832
Length = 984
Score = 1036 bits (536), Expect = 0.0
Identities = 563/572 (98%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 13 tttc-cacttcttccaggcaaaccaactgaacaattaagcccaggccctgcctaggattc 71
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tttcacactacttccaggcaaaccaactgaacaattaagcccaggccctgcctaggattc 725
Query: 72 ctgacaagagcaatgggctttcccccaacctctctcagccctcagaggttcctgacaaac 131
|||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct: 724 ctgacaagagcaatgggctttccccccacctgtctcagccctcagaggttcctaacaaac 665
Query: 132 acccaccactctcctcagcgactaggatgcagcagagactgttgaccaacagacctgaag 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 acccaccactctcctcagcgactaggatgcagcagagactgttgaccaacagacctgaag 605
Query: 192 tgtggaggctaaaactgctgctggaggtttcatacttgctgcaaggacaacccagttata 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgtggaggctaaaactgctgctggaggtttcatacttgctgcaaggacaacccagttata 545
Query: 252 acaaccccctagcacactgcagaccagagggctctcatctaggacactaagctataggtt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 acaaccccctagcacactgcagaccagagggctctcatctaggacactaagctataggtt 485
Query: 312 gtatctgacaggacatgtgtcaggtgctgggcacatgatacattgttggcagaatcccac 371
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtatctgacagaacatgtgtcaggtgctgggcacatgatacattgttggcagaatcccac 425
Query: 372 cttcccacctttcccactttcttctaaaggttgagtcgaagtgactataatgagaaggct 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttcccacctttcccactttcttctaaaggttgagtcgaagtgactataatgagaaggct 365
Query: 432 ataataagtgtgtttatacatcatttacatctgatttgcctgttacgacatagggcaggc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ataataagtgtgtttatacatcatttacatctgatttgcctgttacgacatagggcaggc 305
Query: 492 cactctcaagcagattttgggctgaccaatgtccccgaagttagggaggtcaccaagtct 551
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 304 cactctcgagcagattttgggctgaccaatgtccccaaagttagggaggtcaccaagtct 245
Query: 552 tgattttgttttcttgacatcactttctttct 583
||||||||||||||| ||||||||||||||||
Sbjct: 244 tgattttgttttcttaacatcactttctttct 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_e19.g1 MSMg01no482_e19.g1 CHROMAT_FILE:
MSMg01no482_e19.g1 PHD_FILE: MSMg01no482_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:11 2005
(647 letters)
>mm_chr18_12721504_12722550
Length = 1047
Score = 1176 bits (608), Expect = 0.0
Identities = 638/648 (98%), Gaps = 2/648 (0%)
Strand = Plus / Plus
Query: 1 cccatggttgtgtccacagatggacctactttagacaatctctcattaagactttttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccatggttgtgtccacagatggacctactttagacaatctctcattaagactttttcca 260
Query: 61 tgtgatttggggttgtgtcaaattgacatttgaaaaataagcaccacaaatgccttatct 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgtgatttggggttgtgtcaaattgacatttgaaaaataagcatcacaaatgccttatct 320
Query: 121 gaaacaaatagaagctccaaaaggactcttaatatctaaaggtacaacatctcattcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaacaaatagaagctccaaaaggactcttaatatctaaaggtacaacatctcattcccc 380
Query: 181 aacccctacccaagttgagatgattagccctaaaactacctgcctatatgctaacagacc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 aacccctacccaagttgagatgattagccctaaaactacctgcctatctgctaacagacc 440
Query: 241 ttaacctgggttctgtagccaacagcttttagacacttgtgtgtattggttaaaaggtct 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 441 ttaacctgggttctgtagccaacagcttttagacacttgtgtgtattggt-aaaagatct 499
Query: 301 ggtgattttt-ctctagactacgtgagctatgcccttcttaagtccccataaatatcccc 359
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgattttttctctagactacgtgagctatgcccttcttaagtccccataaatatcccc 559
Query: 360 tctgtccccaggggaacctctatgacaaggtatccacattcactcaagccagggtggctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctgtccccaggggaacctctatgacaaggtatccacattcactcaagccagggtggctt 619
Query: 420 acccagactgcatattttaaacacacaaggagttttaaagtcccaatgctcaatgaccaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acccagactgcatattttaaacacacaaggagttttaaagtcccaatgctcaatgaccaa 679
Query: 480 ttagggcagaggtatctgaaaaggacctctgacctgtaatttgcaggaacctccaagtga 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttaggtcagaggtatctgaaaaggacctctgacctgtaatttgcaggaacctccaagtga 739
Query: 540 ttctcatgtgccttcaagaccaagaagtgatgttgctagtatggaggagtgtgaccatta 599
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 740 ttctcatgtgcctccaagaccaagaagtgatgttgctagcatggaggagtgtgaccatta 799
Query: 600 ccatgagttaaacacaagctttggagttaaggaatcacttgctctgag 647
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 800 ccatgagttaaacacgagctttggagttaaggaatcacttgctctgag 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
