XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GAATTACACCAAAAACCATTATTCCTTTCAACTCTGAAAAAAATTATTTT
GTAAATGCTTATTTATCAACTCCTGGTTTAGACTATCAAAACATTAGGTT
TTCATTCTTATTTAATAAAAATATTTCTTTAAGGGATAGGTGTGAAAATC
TTTCTTACAGAATTTTCACCTGGCTAATCAACCGAGTGCTAGGCTATATG
CCACACACACACACACACACACACACACACACAGTTTTGATATGTATTAT
GATTTGTGATTTTAAAAGGCACTTTTCTGTGGCTGCAATAAAATACCCAA
ACAAACTAACTTCAAGATGGACATCTTGTAGCTCACAGTCTGAGGGGACA
TCCTATCCTGGAAGAGATATCAGGACACAGTTTAAGGGTACATTCCTGAA
AGAGAAGTAAAGACAGCAGATGCTCCAATTAGCTGACCATTTTGGGTCCA
TAGCCAGGAAACAAAGAGTGATAACACTGGAACTCAGTTAGCTTTCTCCA
TTTTATTCAGTCCAGACACTAGTTCATAGGATGCTGTTACCTTCAGTGGG
TGGGTCTTTTTCTCCTCAGTCAAACTAACAGACAATCCCTCATAGATATT
TGTAGAATCTTGTTTCCTACTTTATTCTAGATTCTGTGAAGTTGATAATG
CTTACCTCTGCAGCTACTATATTGTA

CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCCGCAAAACTCTTCATTTTACTGCTCAAAACA
TGTCACTCATTCTCATTCCCCCATTTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTACAAGNTACTGATCCTGCTGCATC
TGAAATGGTATCCCCCTGTGTGCGCACTTGCGGGTAGTGGGCTGCACACA
GACAGCCTGTTCTCCAGTCGAGCAAAGGTCAGAAACCCCAGGGACCTGAT
GGGTGAAAAATTCCACCCTCATGGCACATATTTTTTTCAATCATATCTCC
TGGACCCCCAGCTCCTGTCTAATTTACTTCCTCCACAGGTCCCCCAGAAA
ACGTGTGTGGCTATCAGTCACACCCCACCACGACCAAACCTTCCCACATA
CAAATAACGTTTCTCCCAAACTCTCAATCCAATCCAATGAGAGCCACCTG
TTTCCGAACCCTGAATCACCCCAAAACAGCCCAAAAATTCTACCCAGGGA
AATAAACCTCTGCCAGACCCACCCACTCTTTAGTTCCAAGAACCATAACA
CCTCAAAAAAAATCTCTCCCTAAACCCCCAACAAACCACCACCCCCAATC
CCCACCGAACACACCCCCTCCCCTCCATTCCCCACCAACCAAACCCACAC
CAAACCTCCCCAAAAACCCACCAACCCCAAACACATCCAAAACAACCCCC
CTACCACCCAAAAACAAACTCCCC

Query= MSMg01no482_h15.b1 MSMg01no482_h15.b1 CHROMAT_FILE:
MSMg01no482_h15.b1 PHD_FILE: MSMg01no482_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:23 2005
         (667 letters)



>mm_chr18_28676720_28677786
          Length = 1067

 Score = 1127 bits (583), Expect = 0.0
 Identities = 656/705 (93%), Gaps = 43/705 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaaccattattcctttcaactctgaaaaaaattattttgtaaatgcttatttatcaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 caaaaaccattattcctttcaactctgaaaaaaaatattttgtaaatgcttatttatcaa 260

                                                                       
Query: 61  ctcctggtttagactatcaaaacattaggttttcattcttatttaataaaaatatttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctggtttagactatcaaaacattaggttttcattcttatttaataaaaatatttctt 320

                                                                       
Query: 121 taagggataggtgtgaaaatctttcttacagaattttcacctggctaatcaaccgagtgc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 taagggataggtgtgaaaatctttctaacagaattttcacctggctaatcaaccgagtgc 380

                                                                       
Query: 181 taggctatatgc------------------cacacacacacacacacac----------- 211
           ||||||||||||                  |||||||||||||||||||           
Sbjct: 381 taggctatatgctacacacacgcacacacgcacacacacacacacacacgcacatacaca 440

                                                                       
Query: 212 -acacacacacacagttttgatatgtattatgatttgtgattttaaaa---ggcactttt 267
            ||||||||||||| |||| ||||||||||||||||||||    ||||   |||||||||
Sbjct: 441 cacacacacacacatttttaatatgtattatgatttgtga----aaaaaaaggcactttt 496

                                                                       
Query: 268 ctgtggctgcaataaaatacccaaacaaactaacttcaagatggacatcttgta-----g 322
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||     |
Sbjct: 497 ctgtggctgcaataaaatacccaaacaaactaacttcaagatggacatgt-gtaatatgg 555

                                                                       
Query: 323 ctcacagtctgaggggacatcctatcctggaagagatatcaggacacagtttaagggtac 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctcacagtctgaggggacatcctatcctggaagagatatcaggacacagtttaagggtac 615

                                                                       
Query: 383 attcctgaaagagaagtaaagacagcagatgctccaattagctgaccattttgggtccat 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 attcctgaaagagaagtaaagacagcagatgctccaattagctgaccattttgggtccat 675

                                                                       
Query: 443 agccaggaaacaaagagtgataacactggaactcagttagctttctccattttattcagt 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agccaggaaacaaagagtgataacactggaactcagttagctttctccattttattcagt 735

                                                                       
Query: 503 ccagacactagttcataggatgctgttaccttcagtgggtgggtctttttctcctcagtc 562
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 736 ccagacactagttcataggatgctgctaccttcagtgggtgggtctttttctcctcagtc 795

                                                                       
Query: 563 aaactaacagacaatccctcatagatatttgtagaatcttgtttcctactttattctaga 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aaactaacagacaatccctcatagatatttgtagaatcttgtttcctactttattctaga 855

                                                        
Query: 623 ttctgtgaagttgataatgcttacctctgcagctactatattgta 667
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ttctgtgaagttgataatgcttacctctgcagctactatattgta 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)