Query= MSMg01no482_n17.b1 MSMg01no482_n17.b1 CHROMAT_FILE:
MSMg01no482_n17.b1 PHD_FILE: MSMg01no482_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:51 2005
(660 letters)
>mm_chr18_37611493_37612552
Length = 1060
Score = 551 bits (285), Expect = e-161
Identities = 300/305 (98%)
Strand = Plus / Minus
Query: 1 aggctgagatgagacggcatgttcaatgccaccctggccaataagtgagttcagaacacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggctgagatgagacggcatgttcaatgccaccctggccaataagtgagttcagaacacc 246
Query: 61 ccagggaatacaatgagattgcatcttaaaaagaaagaagtagaaaaattaaacactaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcagggaatacaatgagattgcatcttaaaaagaaagaagtagaaaaattaaacactaag 186
Query: 121 caacctactttgagtaataaattaatccaatagtaaaatcaagaaaaaaatcctgtcaag 180
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 185 caacctactttaagcaataaattaatccaacagtaaaatcaagaaaaaaatcctgtcaag 126
Query: 181 caaaggaaagtggccacacaccacactgagaccaatgagatacagcaaaagcagtaccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 caaaggaaagtggccacacaccacactgagaccaatgagatacagcaaaagcagtaccaa 66
Query: 241 gagggaaatctgtaaacaccaatgaagccattaaagaaagcaagctccgaaataaacaat 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 65 gagggaaatctgtaaacaccaatgaaaccattaaagaaagcaagctccgaaataaacaat 6
Query: 301 ctgac 305
|||||
Sbjct: 5 ctgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_n17.g1 MSMg01no482_n17.g1 CHROMAT_FILE:
MSMg01no482_n17.g1 PHD_FILE: MSMg01no482_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:51 2005
(341 letters)
>mm_chr18_37427365_37428105
Length = 741
Score = 559 bits (289), Expect = e-163
Identities = 331/349 (94%), Gaps = 11/349 (3%)
Strand = Plus / Plus
Query: 1 ctctaatcccagcactcaggaggtagaatcaggtggatctctgtgaggtccaggctagcc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 196 ctctaatcccagcactcaggaggtagaatcaggtggatctctgtgaagtccaggctagcc 255
Query: 61 agaaatgcatagtgaaaccc-tgtctccaaaaaaaa----ggcagacagagatatagttt 115
|||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||
Sbjct: 256 agaaatgcatagtgaaacccctgtttccaaaaaaaaaaaaggcagacagagatacagttt 315
Query: 116 attattcagaaatttttatgttttgtatcttactaatggaaatcatctctgaatcaactt 175
|||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 316 attattcagaaaattttatgttttgtatcttacaaatggaa-tcatctctgaatcaactt 374
Query: 176 gcatgccatcatttataatcacaaaaatgctcagtaaaagtg---attattatttatggt 232
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 375 gcatgccatcatttataatcacaaaaatgctcagtaaaagtggtgattattatttatggt 434
Query: 233 ggcagatggagattaaaataagaggaggatttaatttattttttaaatgtaagagcagat 292
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggcagatggagattaaaatatgaggaggatttaatttattttttaaatgtaagagcagat 494
Query: 293 atagagcttgagttcagtaaagaaatattttccagaattgttagataga 341
||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 495 atagagcttgagttcagtaaaga--tattttccagaattgttaaataga 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
