BAC Information

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BAC

Clone NameMSMg01-482O10
Chromosome18 (Build37)
Map Location 22,667,686 - 22,835,024
singlet/doubletdoublet
Overlap geneAsxl3
Upstream geneKlhl14, 4921528I01Rik, LOC546708, LOC100040547
Downstream geneNol4, LOC100040579, LOC665797, Dtna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482O10.T7 (MSMg01no482_o10.b1)MSMg01-482O10.TJ (MSMg01no482_o10.g1)
ACCAG562956AG562957
length748742
length of high quality
(start - end)		575 (70 - 644)666 (77 - 742)
definitionCHROMAT_FILE: MSMg01no482_o10.b1 PHD_FILE: MSMg01no482_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:54 2005CHROMAT_FILE: MSMg01no482_o10.g1 PHD_FILE: MSMg01no482_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,834,556 - 22,835,024)(22,667,686 - 22,668,350)
sequence
GTTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTATCCCGCCTTATGGGCTGAGGTCCTTCGTCTGTGGCCCA
GGATGAGGCAGCAATTGAATGGCAGAGGCTAAACACCTCATGATGGATAG
AAAGCAAAGAGAGCTTGTTCACTGTGGGCTTCTCCTTTCCTTCTACCCAG
TCTCTGCCATATAGGATGTGCTCTTCATATTCGATATAGGTGTTCCCAAT
TGTCAGTTACCTCTGGAAGTGTACTGCCAGACAAATGAGGCACAAGAGGC
ACACAGGAATACCAGACACACCAGACACACGAGACACACAGCTCAGAGCT
ATTGGAAAATTTTACTGGACCCCTCCTCTCCTGGAAGAGACAGGTCAGAG
AGCACTTAGGCCAGAAGGCAGAGGCTCAGTAAGCCCCTACTATCTCATTC
CTTAAAGACCAATCAGTTTAAAGGGAACACTGTTCCACCTATCATATTGT
GCCTAGTTGCTGATGCTCTATTCTGTCCCTGGAAACCATATAAAAACTCA
CCAAACGGACCACCTGGGATCACTGCCTCTCCTTGGGTCTGGGACAATCC
AAGTGCACTGGAACAATAAATTTCTCTTGCATTTTGTATCGATTTCGGGC
TCCATGTGGTTCACTCAGGGGGTTCCAGATAAGCTAAGGTTCACCTGAGT
CTTCTAACACCAGACACACCAGATACACCAGACATACCAAATATATCA

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCATACGCAGCACAAGGGTGG
AAACAGCGACTGGCAGAAGGTAAATTTCAGTTTCCTGTTATTATGTGACA
TGCTAGAGCGTGTATAGAGTATTAGTACACAGGTTCTACATTGGCGTGTA
CAGACTGTGCTAGAGCAGCTGGGGTATTCTAGAGTACACACACTTTACTA
CAACACACTATGCTGAATGCATGTGCTCTGCTAGGGCACATGCATGATAT
TAGAAAAACCCACATTGCTACAGTGTCTATATTATGTTAGTATAGACATA
CTCTGTGGGAACACAATACACACACTCTGCTACAGTACATACGTTATTGT
CTTATTAGTTAGGGTCTTATTGCTGTGAGACACCATAGCCAAGGCAATTC
TCATAGAGGGCAAAGATTTCATTGAGGCTGGCTTGCAGTTTCAAAGGTTT
AATCCATTATCAACATGGTGGGATGCTTAGCAGCATGCAGGCAGACATAG
TACTGGAGAATGAGCTAAAATGTTTACATCTTGATCTGAAAGCAGGCAGA
AGGAGACCATCTTCAGCAGGCAGCCAAGAGGAGGCTCTCTCCCACGTTGA
ATGGGACTTGAGCACAGGAACTCAAAACCCATCCCTACAATGACACATTT
CCTTGAACAAGGCCACACCTACACCAACAGGCCACACCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_o10.b1 MSMg01no482_o10.b1 CHROMAT_FILE:
MSMg01no482_o10.b1 PHD_FILE: MSMg01no482_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:54 2005
         (575 letters)



>mm_chr18_22834556_22835530
          Length = 975

 Score =  884 bits (457), Expect = 0.0
 Identities = 466/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   ctgaggtccttcgtctgtggcccaggatgaggcagcaattgaatggcagaggctaaacac 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctgaggtccttcgtctgtggcccaggatgaggcagcaattgaatggcagaggctaaacac 410

                                                                       
Query: 68  ctcatgatggatagaaagcaaagagagcttgttcactgtgggcttctcctttccttctac 127
           |||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 409 ctcacgatggatagaaagcaaagagagtttattcactgtgggcttctcctttccttctac 350

                                                                       
Query: 128 ccagtctctgccatataggatgtgctcttcatattcgatataggtgttcccaattgtcag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccagtctctgccatataggatgtgctcttcatattcgatataggtgttcccaattgtcag 290

                                                                       
Query: 188 ttacctctggaagtgtactgccagacaaatgaggcacaagaggcacacaggaataccaga 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttacctctggaagtgtactgccagacaaatgaggcacaagaggcacacaggaataccaga 230

                                                                       
Query: 248 cacaccagacacacgagacacacagctcagagctattggaaaattttactggacccctcc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cacaccagacacacgagacacacagctcagagctattggaaaattttactggacccctcc 170

                                                                       
Query: 308 tctcctggaagagacaggtcagagagcacttaggccagaaggcagaggctcagtaagccc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tctcctggaagagacaggtcagagagcacttaggccagaaggcagaggctcagtaagccc 110

                                                                       
Query: 368 ctactatctcattccttaaagaccaatcagtttaaagggaacactgttccacctatcata 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctactatctcattccttaaagaccaatcagtttaaagggaacactgttccacctatcata 50

                                                            
Query: 428 ttgtgcctagttgctgatgctctattctgtccctggaaaccatataaaa 476
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  ttgtgcctagttgctgatgctctattctgtccctggaaaccatataaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_o10.g1 MSMg01no482_o10.g1 CHROMAT_FILE:
MSMg01no482_o10.g1 PHD_FILE: MSMg01no482_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:54 2005
         (666 letters)



>mm_chr18_22667486_22668551
          Length = 1066

 Score = 1239 bits (641), Expect = 0.0
 Identities = 659/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcatacgcagcacaagggtggaaacagcgactggcagaaggtaaatttcagtttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcatacgcagcacaagggtggaaacagcgactggcagaaggtaaatttcagtttcct 260

                                                                       
Query: 61  gttattatgtgacatgctagagcgtgtatagagtattagtacacaggttctacattggcg 120
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 261 gttattatgtgacatgctagagcatgtatagagtattagtacacaggttctacattggtg 320

                                                                       
Query: 121 tgtacagactgtgctagagcagctggggtattctagagtacacacactttactacaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tgtacagactgtgctagagcagctggggtattctagagtacacacactttactacaatac 380

                                                                       
Query: 181 actatgctgaatgcatgtgctctgctagggcacatgcatgatattagaaaaacccacatt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 actatgctgaatgcatgtgctctgctagggcgcatgcatgatattagaaaaacccacatt 440

                                                                       
Query: 241 gctacagtgtctatattatgttagtatagacatactctgtgggaacacaatacacacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctacagtgtctatattatgttagtatagacatactctgtgggaacacaatacacacact 500

                                                                       
Query: 301 ctgctacagtacatacgttattgtcttattagttagggtcttattgctgtgagacaccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctacagtacatacgttattgtcttattagttagggtcttattgctgtgagacaccat 560

                                                                       
Query: 361 agccaaggcaattctcatagagggcaaagatttcattgaggctggcttgcagtttcaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaaggcaattctcatagagggcaaagatttcattgaggctggcttgcagtttcaaag 620

                                                                       
Query: 421 gtttaatccattatcaacatggtgggatgcttagcagcatgcaggcagacatagtactgg 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 gtttaatccattatcaacatggtgggatacttagcagcatgcaggcagacatagtactgg 680

                                                                       
Query: 481 agaatgagctaaaatgtttacatcttgatctgaaagcaggcagaaggagaccatcttcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatgagctaaaatgtttacatcttgatctgaaagcaggcagaaggagaccatcttcag 740

                                                                       
Query: 541 caggcagccaagaggaggctctctcccacgttgaatgggacttgagcacaggaactcaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggcagccaagaggaggctctctcccacgttgaatgggacttgagcacaggaactcaaa 800

                                                                       
Query: 601 acccatccctacaatgacacatttccttgaacaaggccacacctacaccaacaggccaca 660
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acccatccctacaacgacacatttccttgaacaaggccacacctacaccaacaggccaca 860

                
Query: 661 cccct 665
           |||||
Sbjct: 861 cccct 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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