BAC Information

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BAC

Clone NameMSMg01-482P05
Chromosome18 (Build37)
Map Location 31,062,558 - 31,062,935
singlet/doubletsinglet
Overlap genenone
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482P05.T7 (MSMg01no482_p05.b1)MSMg01-482P05.TJ (MSMg01no482_p05.g1)
ACCAG562994AG562995
length783700
length of high quality
(start - end)
---378 (323 - 700)
definitionCHROMAT_FILE: MSMg01no482_p05.b1 PHD_FILE: MSMg01no482_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:58 2005CHROMAT_FILE: MSMg01no482_p05.g1 PHD_FILE: MSMg01no482_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGCACGCGAGCC
GCNGGAANCCAGGTTTTCGGCACCCGGCGGAAGAANAGAACAAAACACCA
GCACACAACATACTAAATGGACAACCACCAGACATGCCCCCACGAACATA
TCGGACTAGAAAATGTTACCTGGGCGGGGTCGACCTCCTCAATATAACAC
TCGAAGCTCACGCCCCAGAAACTAGACAACAAAAGGAGGTTAAGGGGATT
TATTTTGCAAAGGAACAAGACTTAATATTAGCACTCGGAGACGATATCCT
TGCAGGCAGCACGGCACTTTTTTTTTTTTCCCAGAAAACGCCAGCCGACG
ACCAGAGGCGGTTTTTTGGCCCGATATAAAATCGGAGGCGCCGCACCAGT
GTCCTCTACTCTACTCACGCGACCCACAGGTTGAGAAAGACATTACGGAA
ACAACCCCCTCCCACACCACTCACAAATAACATAAGCACCCCCCAGCGGG
ACTCTTACCAACGCGAAAACCCTATAAGACCAGAAACTCACGTCTCGGAC
GAAAGAAGTTGAATAACACCTCCGAGCACGGAAAACAGCTCGATAAGGCC
CACGGGACGACCAGCATTGATGGTAGCCAAAAAGCGCCCCCCCTGGCAAA
CAGCAAACCCCCAGATTTCTACCCTATTGCCGAACCCCCAATCCCAAATT
TCATACTTCCTTAATGGAAGCCTAGCAAAAGGGTCAACTTCCCCCGGAAT
TTAATCTGGGGTCATCACCCTCAAGGACAGTAA
CTATGATGTGTGAGGCCTGGNGGNCGCCTGGTCACAACATGGGGTGAACT
ATAGAAGTCAACGCACAATTCTCCCTGGAAATTGAAATATTGGTCAGATT
GCTTTTTTAGCCTGAGATGTTCACTGGGCAATAGACCAGTGCTTCCATGT
CTTCCACATATTCCACTCTGGGAGCTTGATAACTGACTGAATTTATGTAC
AAAGGTCAAGATCAAGAGTTGGTGCAGGTTTGCCTATGAGAAACTTTTCA
GGGAAATCGGATTCAAAGCGATTGTTTATGATATGGTATTGTTACAGTAC
CACCATCTGAGAGAATTTTTATGCTTCATGCAAGGCTGATATCATGGCCT
TTTTGGCTGTTCCCAGTAATGTGTGACTGTAATGTTCATGACAAAAGAAA
ACATTATTTACATCAAAACAAGGACATAAACACAAGACTTCCTTCTTTGC
AAACAAAGCATCACTCACCAATGTATATAGGACCTACGGTAATAATGGTG
GTGTCTCTATAAAAAGTTACTTTGTTTGTTTTTCATCTCAGACTTGACTG
CTACATTACAACTGGATTGTGTACCTGAGCTGGAATAGATGCAAAATTTC
TTTATGATCAATTTTTATCCTCCTATCAGAAACATAAATATTCAATTTTG
CTCCCATGGTAGAAAAAAAGGCACTATTTATGCATACATTAAAGTTAAAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_p05.g1 MSMg01no482_p05.g1 CHROMAT_FILE:
MSMg01no482_p05.g1 PHD_FILE: MSMg01no482_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:58 2005
         (378 letters)



>mm_chr18_31062358_31063135
          Length = 778

 Score =  654 bits (338), Expect = 0.0
 Identities = 368/378 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttcatgcaaggctgatatcatggcctttttggctgttcccagtaatgtgtgactgtaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 gcttcacgcaaggctgatatcatggcctttttggctgttcccagtaatgtgtgactgcaa 260

                                                                       
Query: 61  tgttcatgacaaaagaaaacattatttacatcaaaacaaggacataaacacaagacttcc 120
           |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 261 tgttcatgacgaaagaaaacattatttacatgaaaacaaggacataaacacaagacttgc 320

                                                                       
Query: 121 ttctttgcaaacaaagcatcactcaccaatgtatataggacctacggtaataatggtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctttgcaaacaaagcatcactcaccaatgtatataggacctacggtaataatggtggt 380

                                                                       
Query: 181 gtctctataaaaagttactttgtttgtttttcatctcagacttgactgctacattacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gtctctataaaaagttactttgtttgtttttcatctcagacttgactactacattacaac 440

                                                                       
Query: 241 tggattgtgtacctgagctggaatagatgcaaaatttctttatgatcaatttttatcctc 300
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tggattgtgcacctgagctggaatagatgcaaaacttctttatgatcaatttttatcctc 500

                                                                       
Query: 301 ctatcagaaacataaatattcaattttgctcccatggtagaaaaaaaggcactatttatg 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatcagaaacataaacattcaattttgctcccatggtagaaaaaaaggcactatttatg 560

                             
Query: 361 catacattaaagttaaat 378
           || |||||||||||||||
Sbjct: 561 cacacattaaagttaaat 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)