BAC Information

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BAC

Clone NameMSMg01-483F04
Chromosome18 (Build37)
Map Location 82,295,891 - 82,296,440
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039458, LOC100040871
Downstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483F04.T7 (MSMg01no483_f04.b1)MSMg01-483F04.TJ (MSMg01no483_f04.g1)
ACCAG563278AG563279
length750746
length of high quality
(start - end)
697 (54 - 750)439 (84 - 522)
definitionCHROMAT_FILE: MSMg01no483_f04.b1 PHD_FILE: MSMg01no483_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:29 2005CHROMAT_FILE: MSMg01no483_f04.g1 PHD_FILE: MSMg01no483_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTATTACCCTATATTTTATTTATTTAGTTATTTATT
TATCTAGGCTTACACGAGGAGGATATGGTCAAGTTTAGGATATGATGATG
GCTTCTGCTACTGCTGCCCCACAGAGGAACCACGCTATTAGATTTTCTAT
CTAGGGAAATTGGAGTTCCATGGAAATCCACAACCTGTTACTCCGGAGAC
TCATGGCTATTTAATCACTCCCTGACCAATCAGACTTTGAAGTGCTAACC
TTAGTCATGTACGTTTCAACATGTGAAAAACTATTGTATTCACAACTTTT
TTTTCCTTCTAAAAATCATAGCACATCTGCTTTAATCATCACTTTGAGAT
AGTAAGTTATTTGGCTAATGAGTAACAAAAGTGGTTTTGTTTTTTTTTGT
TTTGTTATGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTCTGTCCATGGTT
CTTTGTCTTCGATGACTCAGCAATTAAGTGTGAATAGTGACTCATGTTAG
CAACAGAGTCAACAAGGCAGACATGGCATCTGGTTTATCAGTAGCTTATA
GCCAAGACTGACTTATTTCTTTTTTTTTTCCATTTTTTATTAGGTATTTA
GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCAC
CCCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTATTGGGGCATATAA

AAAAANCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCAGATCAACATTCA
GGGCCCCATCAAATCTGAGGGAAGCAGTGATGGAAGACACAATCTGGCTA
ATAAGGCGGTTAAGGTTGGTTAGGTTGGGCACTCAATGTCGAGGTTTCTA
CGACAGATGTCATAGATGGCCTCATTGTCTACCATGAAGGCACAATCAGA
GTGCTCCAGGGTGGTGTGGGTGGTGAGGATGGAATTGTANGGCTCAACCA
CANCANGGGAAACCTGGGCGGCTGGGTAAATGGAGAACTCCAGCTTGGAC
TTCTTTCCGTAATCCACAGAGAGCCGCTCCATCAGCAGGGAGGTGAAGCC
AGAGCCAGTTCCCCCGCCAAAGCTGTGGAAAACCAAGAAGCCCTGGAGAC
CTGTGCACTGGTCAGCCAGCTTGCGAATCCTGTCCAGGACAATGTCAATG
ATCTCCTTGCCAATGGTGTAGTGGCCACGGGCATAGTTATTGGCAGCATC
CTCCTTGCCTGTGATGAGCTGTTCACGGCGGAATAGCTGGCCGTAGGTGC
CAGTGCGAACTTCATCGATGACTGTTTGTTCTATTTCTTCTAACACTGCC
CCCGTTACTTGCTTGCCACCTCCTCGTTCCCTTGAAAAGGTGTTGATAGA
ATCTTCCTCTCCCTATTGACCCAGTTCCTTTGGATTTTGTTATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_f04.b1 MSMg01no483_f04.b1 CHROMAT_FILE:
MSMg01no483_f04.b1 PHD_FILE: MSMg01no483_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:29 2005
         (697 letters)



>mm_chr18_82295687_82296784
          Length = 1098

 Score =  839 bits (434), Expect = 0.0
 Identities = 528/564 (93%), Gaps = 15/564 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactattaccctatattttatttatttagttatttatttatctaggcttacacga 64
           ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcactatgaacctatattttatttatttagttatttatttatctaggcttacacaa 264

                                                                       
Query: 65  ggaggatatggtcaagtttaggatatgatgatggcttctgctactgctgccccacagagg 124
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 265 ggaggatatggtcaagtttaggatatgatgatggcttttgctattgctgccccacagagg 324

                                                                       
Query: 125 aaccacgctattagattttctatctagggaaattggagttccatggaaatccacaacctg 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aaccacgctattagattttctatctagggaatttggagttccatggaaatccacaacctg 384

                                                                       
Query: 185 ttactccggagactcatggctatttaatcactccctgaccaatcagactttgaagtgcta 244
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 ggactccggagactcatggctatttaatcactccctgaccaatcagactttgaagcgcta 444

                                                                       
Query: 245 accttagtcatgtacgtttcaacatgtgaaaaactattgtattcacaactttttttt-cc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 accttagtcatgtacgtttcaacatgtgaaaaactattgtattcacaactttttttttcc 504

                                                                       
Query: 304 ttctaaaaatcatagcacatctgctttaatcatcactttgagatagtaagttatttggct 363
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 ttctaaaaatcagagcacatctgctttaatcatcactttgagatagtaagttatttggcc 564

                                                                       
Query: 364 aatgagtaacaaaagtggttttgtttttttttgttttgttatgttttgttttgttttgtt 423
           ||||||||||||||||||||||   ||| ||||||| ||| ||||| |||  |    |||
Sbjct: 565 aatgagtaacaaaagtggtttt---tttgtttgttt-gtt-tgtttggttggg----gtt 615

                                                                       
Query: 424 ttgttttgttttctgtccatggttctttgtcttcgatgactcagcaattaagtgtgaata 483
           || |||| |||   ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 616 tt-tttt-ttt---gtccatgtttctttgtctttgatgactcagcaattaagtgtgaata 670

                                                                       
Query: 484 gtgactcatgttagcaacagagtcaacaaggcagacatggcatctggtttatcagtagct 543
           ||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||
Sbjct: 671 gtgactcatgttagcaacagagtcaacaaagcagacacgtcatctggtttatcggtagct 730

                                   
Query: 544 tatagccaagactgacttatttct 567
           ||||||||||||||||||||||||
Sbjct: 731 tatagccaagactgacttatttct 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1098
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1088
Effective search space:   747456
Effective search space used:   747456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)