Query= MSMg01no483_f05.b1 MSMg01no483_f05.b1 CHROMAT_FILE:
MSMg01no483_f05.b1 PHD_FILE: MSMg01no483_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:29 2005
(576 letters)
>mm_chr18_78016203_78017178
Length = 976
Score = 1050 bits (543), Expect = 0.0
Identities = 568/581 (97%), Gaps = 8/581 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctttacgcttaaaggtaaattataaagtgggaggtttgctatttcaggatct 63
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttcaggcttaaaggtaaattataaagtgggaggtttgctatttcaggatct 263
Query: 64 gtagctttgctctctcatttagtaattcagagcttgtcaagagttaaagcatttaagtct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtagctttgctctctcatttagtaattcagagcttgtcaagagttaaagcatttaagtct 323
Query: 124 cattttgcctcatttctcctctattataggttgtaaagagagtaagctagaaagagtttg 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cattttgcctcatttcttctctattataggttgtaaagagagtaagctagaaagagtttg 383
Query: 184 gctaagccaagttccattgtctctcttcccctcatgtgctgataaataagttgtagcccg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actaagccaagttccattgtctctcttcccctcatgtgctgataaataagttgtagcccg 443
Query: 244 aggcaccaaaattgaaagtttagcaaacatttgcataaatttcagcgagtccctatcagt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggcaccaaaattgaaagtttagcaaacatttgcataaatttcagcgagtccctatcagt 503
Query: 304 tcctttgtagctgtggagacttggcaaaagtgtttgtgtacatgaactaagttcttttcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcctttgtagctgtggagacttggcaaaagtgtttgtgtacatgaactaagttcttttcc 563
Query: 364 cagtacgaataacctgcctcatcctgttgagacttgatgctctagagaagggggaggtgg 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagtacaaataacctgcctcatcctgttgagacttgatgctctagagaagggggaggtgg 623
Query: 424 gagcatcctctcaggcaaatgggg--------cgaagagcttctggagggggggctgggg 475
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 gagcatcctctcaggcaaatgggggaatggggcgaagagcttctggagggggggctgggg 683
Query: 476 aggggagcagcatttggaatgtaaataaataaaacaacctgaagaaagaacagatccatc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aggggagcagcatttggaatgtaaataaataaaacaacctgaagaaagaacagatccatc 743
Query: 536 actgacagggaggcagtgtgtagctgtgagttccgcagatg 576
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgacagggaggcagtgtgtagctgtgagttccgcagatg 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_f05.g1 MSMg01no483_f05.g1 CHROMAT_FILE:
MSMg01no483_f05.g1 PHD_FILE: MSMg01no483_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:29 2005
(610 letters)
>mm_chr18_78177717_78178725
Length = 1009
Score = 1089 bits (563), Expect = 0.0
Identities = 593/603 (98%), Gaps = 1/603 (0%)
Strand = Plus / Minus
Query: 8 acccagtcaggagcaaagtacatgatatacatgtatgaaaatattatcttttttgttttg 67
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 acccagtcaggagcaaagtacgtgatatacatgtatgaaaatattatcttttttgttttg 950
Query: 68 ttttgttttgtttttttgagacagggtttctctgtgtagccctggctgtcctggaactca 127
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 ttttgttttgttttgttgagacagggtttctctgtgtagccctggctgtcctggaactca 890
Query: 128 ctttgtagatcaggctggcctcaaactcagaaatccgcctgcctctgcctcccgagtgct 187
|||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 889 ctttgtagatcaggctggcctcgaactcagaaatctgcctgcctctgcctcctgagtgct 830
Query: 188 gggatgaaaatattatcttgaacaccatgacagtgtgtacacagtaactgagaaaggatg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gggatgaaaatattatcttgaacaccatgacagtgtgtacacagtaactgagaaaggatg 770
Query: 248 ttaagagtaaggctgtggaaaccactgtcagctgcagcagtccccggggcacacagggac 307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ctaagagtaaggctgtggaaaccactgtcagctgcagcagtccccggggcacacagggac 710
Query: 308 atgcactaagagctgcaggccctccgagtgtgctcttctatcagacaatgactactgaga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 atgcactaagagctgcaggccctccgagtgtgctcttctatcagacaatgactactgaga 650
Query: 368 gaagacaacgttaacatggaactcggtttaagagggagggggcacagattattaccagga 427
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 649 gaagacaacgttaacatggaacttggtttaagagggagggg-cacagattattaccagga 591
Query: 428 attatggatttacaagacccttttagccgctagtatctagccaaaggctgaaacgaattg 487
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 590 attatggattttcaagacccttttagccgctagtacctagccaaaggctgaaacgaattg 531
Query: 488 tcttacagttaccttgtgctgttggtagagcaatttttgcacacaatcttcctgcatcag 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tcttacagttaccttgtgctgttggtagagcaatttttgcacacaatcttcctgcatcag 471
Query: 548 gtgaaacgctgtcttacacaagtggtccatgaggaagagaatgggctgttctcggtacca 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtgaaacgctgtcttacacaagtggtccatgaggaagagaatgggctgttctcggtacca 411
Query: 608 cag 610
|||
Sbjct: 410 cag 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space: 599400
Effective search space used: 599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
