BAC Information

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BAC

Clone NameMSMg01-483L08
Chromosome18 (Build37)
Map Location 58,540,199 - 58,540,535
singlet/doubletsinglet
Overlap genenone
Upstream genePrrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483L08.T7 (MSMg01no483_l08.b1)MSMg01-483L08.TJ (MSMg01no483_l08.g1)
ACCAG563573AG563574
length1,046754
length of high quality
(start - end)
---336 (82 - 417)
definitionCHROMAT_FILE: MSMg01no483_l08.b1 PHD_FILE: MSMg01no483_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:01 2005CHROMAT_FILE: MSMg01no483_l08.g1 PHD_FILE: MSMg01no483_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATATCAAACCCACTCAGAGGGATGAGGGAATTTTTTTTTCACAAAAC
AAGGGAAAGGAAGGGGGCTGTTCTTCGCGCTGAGGAAATTAAAATCAATG
GGCCGGCGTTAACACTTATTATAGACAGAACCTCCAAGCCAGGGCGCGCA
AGATAGCAAGCGGCGAATAGTAGCTTTTCACCTACCATAATAAACCAGGC
CTATCCATAAGGAGAAAAATGATAAAAAATTATCAGCGCGTGCGCTTGGA
GGATTGAGTTGACTAAGAATAAATATAACAAAAAATCAGGGATATTTATA
GAGAGTTACTCGAGAGATAGTGGTGTGAAGACCAACATTTCCCAAAAAGC
GCCCTTAAAAACCTAACGCCCGCACACTACACGTAGCGCATTATTTCGAG
TTATGCTGCCTCCAACAATTCTATATAATATTACAGAGAGAGGGGAGCAT
CGGCGATAGAAACGAGCGGGCGGGAAATGACAGAGAAAAGCCGACGGAGG
GGGGTATTATAATTACACAACAAACTCAAGGGATTATAAAAACACTGGGG
AACACAACATAAATAGTAACAGAGGGTAAGAAAACCGGGGAAATAGCAAA
TAAGGGGGTGGAAACGAGAATAAATGGGCGAAAGCAAGCCGGGAAAAACA
ATACAATATATTACAGACACGTATGAAGCACAGGCAAAAGATAATAGGGT
GAGTCGGGAACGAAAAGCGATAGGATTATGATCGAGGCGACAGAATATCG
GCTAGACCGAAGAGTGGAAGGGCGATAATCGTTCTGAGCGACGGAGGGGG
CGCCTTATCACAACTTCTCTCAGTTTGAGATTGTCTGATAAATCCTGCGA
GATATTACATATGGGTGCGACCAGATAATAACCGCATCGCAAGTCGTCGT
AAGCTAATTGTGAGGGTGTGGGAGGACCCCACCCCGCAATGTTTGATGAA
CGCAAACAGGTGGATAAGCACGGTGGGGACGCGGCCGCCGTTAGTTAAAG
TTAGTCTGACAGAAACGAGAATTGACGCGGTCAAAGACAAAGACGA
TCCTTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGTTGCACAGTTGAGA
AATTAAGTGTGCAGGAGACACAATGGAGAAGGAACTGAGTAGAACTGGTC
AGTCTTCAGGGACTTGCACTTTTCAATCTTGTGTGCTCATCTGGAATGCA
TTATTCTAAGATCTTTCCTTGCTAAACCCAGAAGAGCCTTTCTGAGCTTT
CAATCATATCTATTTCACACTAAGAAACCTACTGTACAGTTTTCAATTAA
TTCAGCGAACTGTAGTTTTATGTTACTCGGAGAAATCTTTTTCATTGAAG
ACAAACAGAAAGTCTAGAAAGAGTGTCAGGTACACAGAAGCTGAAGAAAT
ATGACTTACGAGGTAGGCCCCACTCACACAGTTGAATAGAGAACCAGGGT
TGTGAGAGAGCTACTTCTTGGAGTTTAAGCATCATACTTTCTAAAGTAAC
TCCTTATATTTAATAATTGCTGAGTAAATGAATATAACAGAGTAGACATC
AGAGTCTGGAGAATACAATGAACACAGACATTGAGAAAGAGCCCCTTTTC
ATTTACTATTATTTAAAGTAATTTAGGCATAGGCTAATGTCTGGTTATGT
TATTCAGAAATTTTACAAAGACCTTTTTTGAGGGTTAAACTTTATTGATT
TCAAGACATCTCCCTTTCTTGAAGTAGCTTGAGAATATCCTCAATAAAAC
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_l08.g1 MSMg01no483_l08.g1 CHROMAT_FILE:
MSMg01no483_l08.g1 PHD_FILE: MSMg01no483_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:01 2005
         (336 letters)



>mm_chr18_58539999_58540735
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%), Gaps = 1/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagttgcacagttgagaaattaagtgtgcaggagacacaatggagaaggaactgagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 accagttgcacagttgagaaattaagtgtgcaggagacacaatggagaaggaactgagta 478

                                                                       
Query: 61  gaactggtcagtcttcagggacttgcacttttcaatcttgtgtgctcatctggaatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaactggtcagtcttcagggacttgcacttttcaatcttgtgtgctcatctggaatgcat 418

                                                                       
Query: 121 tattctaagatctttccttgctaaacccagaagagcctttctgagctttcaatcatatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tattctaagatctttccttgctaaacccagaagagcctttctgagctttcaatcatatct 358

                                                                       
Query: 181 atttcacactaag-aaacctactgtacagttttcaattaattcagcgaactgtagtttta 239
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atttcacactaagaaaacctactgtacagttttcaattaattcagcgaactgtagtttta 298

                                                                       
Query: 240 tgttactcggagaaatctttttcattgaagacaaacagaaagtctagaaagagtgtcagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgttactcggagaaatctttttcattgaagacaaacagaaagtctagaaagagtgtcagg 238

                                                
Query: 300 tacacagaagctgaagaaatatgacttacgaggtagg 336
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tacacagaagctgaagaaatatgacttacgaggtagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 737
Length adjustment: 9
Effective length of query: 327
Effective length of database: 728
Effective search space:   238056
Effective search space used:   238056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)