Query= MSMg01no484_h03.b1 MSMg01no484_h03.b1 CHROMAT_FILE:
MSMg01no484_h03.b1 PHD_FILE: MSMg01no484_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:01 2005
(590 letters)
>mm_chr18_11105720_11106709
Length = 990
Score = 893 bits (462), Expect = 0.0
Identities = 491/506 (97%), Gaps = 10/506 (1%)
Strand = Plus / Minus
Query: 1 acagctctccagtactttctagagccactgtggctccctacaaacatctagaagcactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagctctccagtactttctagagccactgtggctccctacaaacatctagaagcactgt 442
Query: 61 ccccctgcccccactcatcaggaactcctcacacactctgagaagcttcacatattgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccctgcccccactcatcaggaactcctcacacactctgagaagcttcacatattgtct 382
Query: 121 ggtggatgttttcagctatgtgggcctcctgcttcctaggtgtgtttcattagaatggct 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gatggatgttttcagctatgtgggcctcctgcttcctaggtgtgtttcattagaatggtt 322
Query: 181 gaagctgcagttccccagcttcatatattggttatttcagaaatgccatcatctcatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagctgcagttccccagcttcatatattggttatttcagaaatgccatcatctcatgag 262
Query: 241 attttttttt-----tccaagaatgatacctacaggccttaggtgtcattagttatatta 295
| |||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 261 a-----ttttaacagtccaagaaggatacctacaggccttaggtatcattagttatatta 207
Query: 296 gttaggtatcttagttaaggtttctactgctgtgataaaacaccatgaattgaggagaaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gttaggtatcttagttaaggtttctactgctgtgataaaacaccatgaattgaggagaaa 147
Query: 356 agggtttccactcaacttacacttccaggtaaaagtcaatcactgaaaaagttagtacag 415
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agggtttccgctcaacttacacttccaggtaaaagtcaatcactgaaaaagttagtacag 87
Query: 416 aaacctggagacaggaaccgatagagagaccatagaggagtgcttgctctccctggcttg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aaacctggagacaggaaccgatagagagaccatagaggagtgcttgctctccctggcttg 27
Query: 476 ctcagcctgctttcttatagcacgca 501
||||||||||||||||||||||||||
Sbjct: 26 ctcagcctgctttcttatagcacgca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_h03.g1 MSMg01no484_h03.g1 CHROMAT_FILE:
MSMg01no484_h03.g1 PHD_FILE: MSMg01no484_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:01 2005
(601 letters)
>mm_chr18_10902135_10903135
Length = 1001
Score = 1100 bits (569), Expect = 0.0
Identities = 597/615 (97%), Gaps = 14/615 (2%)
Strand = Plus / Plus
Query: 1 cactcctttcctgatcaatattgctgcacacctagcgccgtcacgacttcttcttcctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cactcctttcctgatcaatattgctgcacacctagcgccgtcacgacttcttcttcctat 246
Query: 61 aatttacctgctctgtgcagcaggttacctcagagcaccttcacgttctcagctgaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aatttacctgctctgtgcagcaggttacctcagagcaccttcacgttctcagctgaacaa 306
Query: 121 aacaaagatctaatgcttgtatggctattgaaaagactggagagagtctggttataaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aacaaagatctaatgcttgtatggctattgaaaagactggagagagtctggttataaaaa 366
Query: 181 gaaaaacaaccagagccaagagacgagaggcaggtgagattaacggaaacggttaattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaaaaacaaccagagccaagagacgagaggcaggtgagattaacggaaacggttaattta 426
Query: 241 atttaacctccgccgtgtaacctcccatccaatgctcgattcatgtacgtgtttgccaca 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 427 atttaacctccgccgtgtaacctcccatccaatgctcgattcatgtgcgtgtttgccaca 486
Query: 301 gcattagctcacattctttccttcatggggaatctcaaaactgactttgtctttgactct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gcattagctcacattctttccttcatggggaatctcaaaactgactttgtctttgactct 546
Query: 361 ttggaggcacatcccatatcagaccagcttcatggcaatattgatggcaccttatggctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttggaggcacatcccatatcagaccagcttcatggcaatattgatggcaccttatggctg 606
Query: 421 gtggctc--------------acacacacacacacacacacagagtgtattgctcgggct 466
||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 607 gtggctcccacacatacacacacacacacacacacacacacagagtgtactgctcgggct 666
Query: 467 gtagcacatgcctgataaacactagcttacaattttatacgtttgcatgaattgtcccct 526
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 667 gtagcacatgcctgataaacactagcttagaattttatacgtttgcatgaattgtcccct 726
Query: 527 tttcctagctcagcccccaagctgggcccagtcgacccctttcctggggaagcttccttg 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 727 tttcctagctcagcccccaagctgggcccagtcgacccctttcctggggaagcttctttg 786
Query: 587 tcttccacctccatt 601
|||||||||||||||
Sbjct: 787 tcttccacctccatt 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
