Query= MSMg01no486_d10.b1 MSMg01no486_d10.b1 CHROMAT_FILE:
MSMg01no486_d10.b1 PHD_FILE: MSMg01no486_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:27 2005
(565 letters)
>mm_chr18_47739686_47740649
Length = 964
Score = 975 bits (504), Expect = 0.0
Identities = 549/564 (97%), Gaps = 1/564 (0%)
Strand = Plus / Plus
Query: 2 gaattctgtcccctttactagagaggggcagaaataatacatatgagttttttttcctac 61
||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 202 gaattctgtcccccttagtagagaggggcagaaataatacatatgagttttttt-cctac 260
Query: 62 tttcaggagaatacagagaggacaggatttttcttgtgtgttctgcttctcagtgactta 121
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaggagaatacagagaggacagaatttttcttgtgtgttctgcttctcagtgactta 320
Query: 122 gcgtttatccatccctatgcaaaagcaacatactttggagagagatattttcctattatc 181
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gtatttatccatccctatgcaaaagcaacatactttggagagacatattttcctattatc 380
Query: 182 agtagtgtttttcattgacaaacttcccaccccctcccccatttaaaaaccaattagggc 241
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 381 agtagtgtttttcattgacaaacttctcacccgctcccccatttaaaaaccaattagggc 440
Query: 242 ttttcccaattttatttccttttgctatgataaaataccccgacaaagcaagttaaggga 301
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttccagttttatttccttttgctatgataaaataccccgacaaagcaagttaaggga 500
Query: 302 gaaaggatttattttatattcatttatttttgatacagggtctttctgtgtagccctggc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaggatttattttatattcatttatttttgatacagggtctttctgtgtagccctggc 560
Query: 362 tggcctggaacttattatatagaccaggctggccttgaactcaaaaagatccaccttctt 421
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tggcctggaacttactatgtagaccaggctggccttgaacccaaaaagatccaccttctt 620
Query: 422 ctgtctcccaagtgctgggattaaaggcatgtgccaacaagcctagaagaaaagggtttc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtctcccaagtgctgggattaaaggcatgtgccaacaagcctagaagaaaagggtttc 680
Query: 482 ttttagctctcagttcatcgtggcaggaagatcaaggcattgggaactttgggctcagag 541
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttagctctcagtttatcgtggcaggaagatcaaggcattgggaactttgggctcagag 740
Query: 542 ggaattggagaatttaggttatag 565
||||||||||||||||||||||||
Sbjct: 741 ggaattggagaatttaggttatag 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_d10.g1 MSMg01no486_d10.g1 CHROMAT_FILE:
MSMg01no486_d10.g1 PHD_FILE: MSMg01no486_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:27 2005
(662 letters)
>mm_chr18_47918887_47919947
Length = 1061
Score = 1251 bits (647), Expect = 0.0
Identities = 659/663 (99%), Gaps = 3/663 (0%)
Strand = Plus / Minus
Query: 1 agctgccatttgccaaggagaagatctaagtcaggttggctgaggaaggagaacagataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agctgccatttgccaaggagaagatctaagtcaggttggctgaggaaggagaacagataa 802
Query: 61 gtgtttgaaagcatatataactgactttatctgttccctcttttaataataaacatttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgtttgaaagcatatataactgactttatctgttccctcttttaataataaacatttat 742
Query: 121 tagacttgttcctaaaataacctccccaaaatcaaacgatatgatcagctctcataagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagacttgttcctaaaataacctccccaaaatcaaacgatatgatcagctctcataagca 682
Query: 181 actcttcccatgcttattgaatgcattgtagcctccagtatctagcagtttatccaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actcttcccatgcttattgaatgcattgtagcctccagtatctagcagtttatccaaaag 622
Query: 241 cattggaaagtgcttattataattgctcaaaggatacccggagattattctgatttcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattggaaagtgcttattataattgctcaaaggatacccggagattattctgatttcttc 562
Query: 301 tgtggctccgtgcatttgaaattaattgaataataaatttagattcttaattctcagctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggctccgtgcatttgaaattaattgaataataaatttagattcttaattctcagctt 502
Query: 361 ttggcttcctgacttacagtccccgattttattgcagcgctcccttagattctaccaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggcttcctgacttacagtccccgattttattgcagcgctcccttagattctaccaaga 442
Query: 421 ggtttagctgtctaatcaaactgagttaccgagaggccatagaggtcatccatgtagata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttagctgtctaatcaaactgagttaccgagaggccatagaggtcatccatgtagata 382
Query: 481 cagcatctattattttgacaaatgagtttacagcatgaaggcagaaaccttgctgcctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcatctattattttgacaaatgagtttacagcatgaaggcagaaaccttgctgcctcc 322
Query: 541 cacttcatttgggctcatttgttttgcatatcacatgaagtttaattccaaaatttcttc 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttcatttgggctcatttgtgttgcatatcacatgaagtttaattccaaaatttcttc 262
Query: 601 tcccacccccccc-ccaaccaaaggaaatctgggtcatgctatttctttaaaaaaaaaaa 659
|||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccc-ccccccccacca-ccaaaggaaatctgggtcatgctatttctttaaaaaaaaaaa 204
Query: 660 aaa 662
|||
Sbjct: 203 aaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
