Query= MSMg01no486_i02.b1 MSMg01no486_i02.b1 CHROMAT_FILE:
MSMg01no486_i02.b1 PHD_FILE: MSMg01no486_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:50 2005
(629 letters)
>mm_chr18_10103631_10104664
Length = 1034
Score = 934 bits (483), Expect = 0.0
Identities = 514/527 (97%), Gaps = 5/527 (0%)
Strand = Plus / Minus
Query: 1 caaggattactaccagctgcaagctgtattggaagctgaacgaagagacagagggcatga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 527 caaggattactaccagctgcaagctgtattggaagctgagcgaagagacagagggcatga 468
Query: 61 ttctgagatgattggagaccttcaaggtaataaatactttttcttatgtgaagtatgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttctgagatgattggagaccttcaaggtaataaatactttttcttatgtgaagtatgtca 408
Query: 121 caaaatttaccattgtaagtttttgttttattgtatatattattattgtgaggtgtgtgg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 407 caaaatttaccattgtaagtttttgttttattgtatatattattactgtgaggtgtgtgg 348
Query: 181 tctgttgccattgtagcacatatgggtgctcagagaaaaacgtggtaggactaattcatt 240
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct: 347 tctgttgccattgtagcacatatgggtggtcagagaaaaaggtggtaggactaactcatt 288
Query: 241 ctctgtcttcacctggtttctaggtactgtgctcaggttggtagggtggcatggttagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctctgtcttcacctggtttctaggtactgtgctcaggttggtagggtggcatggttagcc 228
Query: 301 ct-----gtcagagccaccctgccaacaccattttaaacatttttaagtgtgtatttcag 355
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 227 ctttaccgtcagagccaccctgccaaccccattttaaacatttttaagtgtgtacttcag 168
Query: 356 tgtcattaaatacattcaacattactgtgcctctttccacaaatctcccaaccattttag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tgtcattaaatacattcaacattactgtgcctctttccacaaatctcccaaccattttag 108
Query: 416 tcactccaaactaaatggtacctgttatacaataactgattccttccttcctgcagtggt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tcactccaaactaaatggtacctgttatacaataactgattccttccttcctgcagtggt 48
Query: 476 ctctagccgtcatcctactttctgtgccccttaccaaaaagaccagg 522
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 47 ctctagccgtcatcctactttctgtgccccttaccaaaaagatcagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1034
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1024
Effective search space: 633856
Effective search space used: 633856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_i02.g1 MSMg01no486_i02.g1 CHROMAT_FILE:
MSMg01no486_i02.g1 PHD_FILE: MSMg01no486_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:50 2005
(589 letters)
>mm_chr18_9966398_9967386
Length = 989
Score = 1021 bits (528), Expect = 0.0
Identities = 575/592 (97%), Gaps = 3/592 (0%)
Strand = Plus / Plus
Query: 1 acttacaggcctagctcttggatacagaatttaccattacaatacatagcagcagaccaa 60
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgcaggcctagcccttggatacagaatttaccattacaatacatagcagcagaccaa 260
Query: 61 acctgtcttgtcttttattctacctgcttgccttcttatatgaatatctgtctgtctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgtcttgtcttttattctacctgcttgccttcttatatgaatatctgtctgtctgtc 320
Query: 121 tgtctgtctgtctgtctgtctctattacactctaaatcatttgatgtggttctcatatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctgtctgtctgtctgtctctattacactctaaatcatttgatgtggttctcatatct 380
Query: 181 gggagatcttttcactttttagctttttactccctgttgatactttgaactttgctttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagatcttttcactttttagctttttactccctgttgatactttgaactttgctttct 440
Query: 241 agttttaaaatatggtaagcatgtgtctatatctgatcatttcagtgtgttgtatttttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttttaaaatatggtaagcatgtgtctatatctgatcatttcagtgtgttgtatttttg 500
Query: 301 tgatatcttttttggttttaacttagaatgtcttgtgtttctgataactgttgtattttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatatcttttttggttttaacttagaatgtcttgtgtttctgataactgttgtattttt 560
Query: 361 tttt---ctttttggtttttcgagacagggtttctctgtgtagccttggctgtcctgaaa 417
|||| ||||||||||||| || ||||||||||||||||||||| |||||| |||||||
Sbjct: 561 tttttttctttttggttttttgaaacagggtttctctgtgtagccctggctgccctgaaa 620
Query: 418 ctctgtagatcaggctggcctcaaactcagaaatccgccttcctctgcctcccaagcgct 477
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgtagatcagtctggcctcaaactcagaaatccgccttcctctgcctcccaagcgct 680
Query: 478 aggattaaaagcatgcgccaccactgctcggtgagaagaatagttttgagtcccaggatg 537
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 681 gggattaaaagcatgtgccaccactgcccggtgagaagaatagttttgagtcccatgatg 740
Query: 538 gatacctttcttgagagaaggttttcattgcttgtatatggtgcctataaga 589
|||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 gataactttcttgagagaaggttttcattgcttgtatatggtgcctctaaga 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
