Query= MSMg01no486_n09.b1 MSMg01no486_n09.b1 CHROMAT_FILE:
MSMg01no486_n09.b1 PHD_FILE: MSMg01no486_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:14 2005
(600 letters)
>mm_chr18_85649120_85650119
Length = 1000
Score = 1093 bits (565), Expect = 0.0
Identities = 574/577 (99%)
Strand = Plus / Plus
Query: 24 ggatcttttgattttacttgctctttttgccacacatttatgtaaaattttgatgtcctt 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ggatcttttgattttacttgctctttttgccacacatttatgtaaaattttgatgtcctt 283
Query: 84 catgtcatcagctttagtcatatgagagcaatttgacttgttgataaaatgaaggtggtc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catgtcatcagctttagtcatatgagagcaatttgacttgttgataaaatgaaggtggtc 343
Query: 144 actttcctatgactaatattttcactggtagtctcattgctgtgtatgaaattttagttt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 actttcctatgactaatattttcactggtagtctcattgctgtgtatgaaattttagttt 403
Query: 204 tgtggtctattatttaatagtatgtcatttaccaagatatagcaatatgtataatataaa 263
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgtggtctattatttaatagaatgtcatttaccaagatatagcaatatgtataatataaa 463
Query: 264 ggcaaataattttaggggactttaaaaggatatggagactaaatagttacaaaaattatt 323
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggcaaataattttaggagactttaaaaggatatggagactaaatagttacaaaaattatt 523
Query: 324 caaactccatgctgtgttttaaactcatcaaccgcccttaaaggcagataaatactggtg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caaactccatgctgtgttttaaactcatcaaccgcccttaaaggcagataaatactggtg 583
Query: 384 cctatcatttaaggcttaagctgccttgaagaaaactcaatatatttttcccttcaatct 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cctatcatttaaggcttaagctgccttgaagaaaactcaatatatttttcccttcaatct 643
Query: 444 gtcagtctgattaaatattatggcattagtatttgttagataatttctaaatgcaagaaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gtcagtctgattaaatattatggcattagtatttgttagataatttctaaatgcaagaaa 703
Query: 504 atgtacgcataatttttattctatgccgtaacatcattgacttgctataagtactgaaat 563
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atgtaagcataatttttattctatgccgtaacatcattgacttgctataagtactgaaat 763
Query: 564 tgtatatattatataaaaggaaggggtcttgtagatc 600
|||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgtatatattatataaaaggaaggggtcttgtagatc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_n09.g1 MSMg01no486_n09.g1 CHROMAT_FILE:
MSMg01no486_n09.g1 PHD_FILE: MSMg01no486_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:15 2005
(623 letters)
>mm_chr18_85754050_85755071
Length = 1022
Score = 1147 bits (593), Expect = 0.0
Identities = 614/621 (98%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 3 ggaattctgtgggagaataggcttagatgggaaggacagccaatgaaaggagggagaaga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ggaattctgtgggagaataggcttagatgggaaggacagccaatgaaaggagggagaaga 855
Query: 63 gaaagaatcacccaacttaaattagtttttgtcaggaatttgagcactgagaggcaactg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaaagaatcacccaacttaaattagtttttgtcaggaatttgagcactgagaggcaactg 795
Query: 123 taatgcagtagacggtcctacccacccatgcacatacaggcagcattaactgtgctcagt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 taatgcagtagacggtcctacccacccatgcacatacaggcagcattaactgtgctcagt 735
Query: 183 ggtattgactaggggacaggggcatgaagttggaagcaaaagtgatggagagaataatag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ggtattgactaggggacaggggcatgaagttggaagcaaaagtgatggagagaataatag 675
Query: 243 aggaatcatattgaaaggagtgtgagatgaatttgcttaaacacattatatacatgaatg 302
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aggaatcagaaggaaaggagtgtgagatgaatttgcttaaacacattatatacatgaatg 615
Query: 303 aatgatgaataagacactttgaaagttaaaaaaaatcaatactatattgttttaaaatca 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 614 aatgatgaataagacactttgaaagtt-aaaaaaatcaatactatattgttttaaaatca 556
Query: 363 caagaaagaaaatgtagaaaaatccagtatggaaatctgttgctttacgacataatatta 422
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 caagaaagaaaatgtagaaaaatccagtatagaaatctgttgctttacgacataatatta 496
Query: 423 aaaataaaatattttaaaattatatatactcataaatatatcatacaggtaaaacctttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaaataaaatattttaaaattatatatactcataaatatatcatacaggtaaaacctttc 436
Query: 483 aaacataatcacatagtgagtctgagccatgggctgctctaaacaacaggcatggcacta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaacataatcacatagtgagtctgagccatgggctgctctaaacaacaggcatggcacta 376
Query: 543 gctacaaaagtggagtcgtggatccagaccttacttgccaattgcagtgttctcccatga 602
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gctacaaaattggagttgtggatccagaccttacttgccaattgcagtgttctcccatga 316
Query: 603 tgcatgctgctcattatcaca 623
|||||||||||||||||||||
Sbjct: 315 tgcatgctgctcattatcaca 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1022
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1012
Effective search space: 620356
Effective search space used: 620356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
