BAC Information

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BAC

Clone NameMSMg01-487B12
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,899
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487B12.T7 (MSMg01no487_b12.b1)MSMg01-487B12.TJ (MSMg01no487_b12.g1)
ACCAG566139AG566140
length741749
length of high quality
(start - end)
572 (78 - 649)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no487_b12.b1 PHD_FILE: MSMg01no487_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:36 2005CHROMAT_FILE: MSMg01no487_b12.g1 PHD_FILE: MSMg01no487_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTCGATCTAAATTTGCGGCGCTAAACGACNCACATATCGACAAATCCGC
GGAATTCTCTGAATTCCCTGTACTTTCAGGTCCACATTTGCTCTGGCTCT
GGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAAT
GGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCA
CTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTG
TAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGT
TTTTTTTTTTTTTTTAGAGACTTGTTTTCTCTGTATAGCCCTGGCTGTCC
TGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTAATACTTCCCCCGCGATTGCCGTAACTTGCAATCTAGTGGGC
TTATGTTTGATTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTTTATA
TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTA
TTTTATTTTATTTTATTTTATTTTATTTTGGTTTTTGAGACAGGGTTTCT
CTGTATAGCCCTGGCTGTCCTGGAACTCAGTTTGCAGACCAGGCTGGCCT
AGAACTCAGAAATCCTCCCATCTCTGCCTCCCGAGTGCTGAGATTAAAGG
CGTGCACCACCACACCCGGCTATTTTTAAATTTTTTTATTT
CTCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGAC
TTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAACAG
TTCAGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGACA
TGCAGATCCCTGCCCCCCACCCCACCCCTCCCTCAGCCCCACCCAAACAT
AGGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGTGCTGTGAGAGAATTTAG
ATAGCTCGAAGAAATATTTTTCTGGAGACTTCATTCATTTACTTATTTTA
TTGAGTATATGGTGAAAGAGGGAAAATGGCTCAAAAAGGAGGGAGGGCAG
ACTGTCTTCCCATGCTGGGATCATTCATGCCTTAAGAAGAAATGTAGGAG
GCTGGAGAGATGGCTCATCGGTTTAGAGCCCTGACTGCTCTTCTGAAGAT
CCTGAGTTCAAATCCCAGCAACCACATGGGTGGGTGGTTCACAACCACTC
ACAATGAGATCTGGTGCCCTCGTCTAGTGTGTCCTACAACTGCTTTTGCG
CACTTACATATATAATAAATAAATCCGACGCATACCGCGGAGGGAGGCCT
TTTTTTTTTTTTTCCGCTCCGTTGCGCTTGTTCTCCCCCTAGCCTTTTGT
TTTTTGTGTGCCACCCTTACGTGCTGCCCCTTGTTCTTTTTTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_b12.b1 MSMg01no487_b12.b1 CHROMAT_FILE:
MSMg01no487_b12.b1 PHD_FILE: MSMg01no487_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:36 2005
         (572 letters)



>mm_chr18_40467476_40468446
          Length = 971

 Score =  327 bits (169), Expect = 1e-93
 Identities = 211/225 (93%), Gaps = 1/225 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtccacatttgctctggctctggcaactgactgaaccaaacaattaggctcataccta 60
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 424 aggtccacctttgctctggctctggcaactgactgaaccaaacaa-taggctcataccta 366

                                                                       
Query: 61  gaactttggaaatggtaatggagttgataacacaccctaacagaaagaggaatgctccac 120
           || ||| | |||||||||||||||||| ||||||| |||||||||||||||| |||||||
Sbjct: 365 gatcttcgaaaatggtaatggagttgaaaacacactctaacagaaagaggaaggctccac 306

                                                                       
Query: 121 tcactagtacactttcactagaagcctcaccctgtcagcagtttaggaatttgtaaagcc 180
           ||||||| | |||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 305 tcactagaagactttcactagaagcctcgccctgccagcagtttaggaatttgtaaagcc 246

                                                        
Query: 181 aatctggacaatatttaaatggtttggaatttctacttcatgttt 225
           ||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 245 aatctggacaatatttacatgatttggaatttctacttcatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space:   540082
Effective search space used:   540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)