BAC Information

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BAC

Clone NameMSMg01-487E12
Chromosome18 (Build37)
Map Location 50,303,437 - 50,304,007
singlet/doubletsinglet
Overlap geneHsd17b4
Upstream geneDtwd2, Dmxl1, Tnfaip8, LOC626721
Downstream geneLOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487E12.T7 (MSMg01no487_e12.b1)MSMg01-487E12.TJ (MSMg01no487_e12.g1)
ACCAG566282AG566283
length751753
length of high quality
(start - end)
331 (332 - 662)571 (76 - 646)
definitionCHROMAT_FILE: MSMg01no487_e12.b1 PHD_FILE: MSMg01no487_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:51 2005CHROMAT_FILE: MSMg01no487_e12.g1 PHD_FILE: MSMg01no487_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCATCAATAAXXXXXXXXXXXXXXXXXXXXXXAAATCAAGAACACCG
CGGAATTCTTTTTTTTCCCAAAAATTAACATTTCATATTCTTTTTTTTCC
ATTTTTTATTAGGTATTTATCTCATTTACATTTCCAATGCTATACCAAAA
GTCCCCCATACCCACCCACCCCCACTCCCATACCCACCCACTCCCCCTTT
TTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTCCATGTCCAA
TGGGCCTCTCTTTCCACTGATGGCTGACTAGGCCATCTTTTGATACATAT
GCAGCTAGAGTCAAGAGCTCTCTTGGTTATTGGTTAGTTCATAATGTTGT
TCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGAGTACTTTCTCTAG
TTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATC
CACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAACTACA
TCTGGGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGT
TTGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGG
TCCATCCTTTCATCTCACCTCCAAACTTTGTCTCTGTAACTCCTTCCATG
GGTGTTTTGTTCCCAATTCTAAGGAAGGGCATAGTGTCCACACTTCAGTC
TTCATTCTTCTTGAGTTTCATGTTGTTAGCAATTTGTATCTTATATCCTG
G
CGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTAATGAAACCAAATGAGTAAGAA
TGGCCAAAAATGGGACAGCTCTCAATCCAGGGTTGTTTTGTAGTGTTCTT
CAGGTGGGTCACTCATTGCTTTGAAGTCCTTAAAAGTAGGCTGTTTAACT
CATTTGAAAGTCTTGTCAAAAATAGAGGTAATAGTGAGTATTTTATAGAT
ATTTCCTGATAATGAGCTGTGTAGTCTAACCATGATTTGTTATTTTGAGT
ATTAGTTATATATGTTTTATTTATGAGTATCTATTTAGATATTTGCTTTT
AATGCATGTATGTCAGTTCATGTATGTGTGGGATGGGTATGCACATTCAT
TTATATGCCAGAGACAGGTTGCTGTCCTGAGGAATGCCACCTACCTCCTT
TGAGATAGGGCCTCTTATTGGTCTGGAGCTCACTAGTTGGGCCAGACTTG
TTGGTAGCTGTCTTTGCCTTACCAGCACTGGGATTACACACATTTACTAC
CATGCCTAAAGTTTTCACATGGCTTCTGGGACTCTAACTCAAGTTCTTAT
GCTTGTGTGACAAGCACTTTGCCAGGTGAGCTAAATCTCTCCAGGTACTT
ACTTAAAGGAGGCTGGTCTCAAGTTGCTTTGTGTCAGTTTGTGTTGCCGG
GGTGCACATGCAAGTGGAGATGTAAAAAGATGGCACTGTCTCCCTCTTGG
GTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_e12.g1 MSMg01no487_e12.g1 CHROMAT_FILE:
MSMg01no487_e12.g1 PHD_FILE: MSMg01no487_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:51 2005
         (571 letters)



>mm_chr18_50303237_50304207
          Length = 971

 Score = 1065 bits (551), Expect = 0.0
 Identities = 566/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaatgaaaccaaatgagtaagaatggccaaaaatgggacagctctcaatccagggttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaatgaaaccaaatgagtaagaatggccaaaaatgggacagctctcaatccagggttg 260

                                                                       
Query: 61  ttttgtagtgttcttcaggtgggtcactcattgctttgaagtccttaaaagtaggctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgtagtgttcttcaggtgggtcactcattgctttgaagtccttaaaagtaggctgtt 320

                                                                       
Query: 121 taactcatttgaaagtcttgtcaaaaatagaggtaatagtgagtattttatagatatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactcatttgaaagtcttgtcaaaaatagaggtaatagtgagtattttatagatatttc 380

                                                                       
Query: 181 ctgataatgagctgtgtagtctaaccatgatttgttattttgagtattagttatatatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgataatgagctgtgtagtctaaccatgatttgttattttgagtattagttatatatgt 440

                                                                       
Query: 241 tttatttatgagtatctatttagatatttgcttttaatgcatgtatgtcagttcatgtat 300
              ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaattcatgagtatctatttagatatttgcttttaatgcatgtatgtcagttcatgtat 500

                                                                       
Query: 301 gtgtgggatgggtatgcacattcatttatatgccagagacaggttgctgtcctgaggaat 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gtgtgggatgggtatgcacattcatttatatgccagagacaggttgttgtcctgaggaat 560

                                                                       
Query: 361 gccacctacctcctttgagatagggcctcttattggtctggagctcactagttgggccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccacctacctcctttgagatagggcctcttattggtctggagctcactagttgggccag 620

                                                                       
Query: 421 acttgttggtagctgtctttgccttaccagcactgggattacacacatttactaccatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttgttggtagctgtctttgccttaccagcactgggattacacacatttactaccatgc 680

                                                                       
Query: 481 ctaaagttttcacatggcttctgggactctaactcaagttcttatgcttgtgtgacaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaaagttttcacatggcttctgggactctaactcaagttcttatgcttgtgtgacaagc 740

                                          
Query: 541 actttgccaggtgagctaaatctctccaggt 571
           |||||||||||||||||||||||||||||||
Sbjct: 741 actttgccaggtgagctaaatctctccaggt 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)