Query= MSMg01no487_f22.b1 MSMg01no487_f22.b1 CHROMAT_FILE:
MSMg01no487_f22.b1 PHD_FILE: MSMg01no487_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:57 2005
(582 letters)
>mm_chr18_63485800_63486778
Length = 979
Score = 1000 bits (517), Expect = 0.0
Identities = 565/583 (96%), Gaps = 5/583 (0%)
Strand = Plus / Plus
Query: 1 ctacttatttaggagctaatatagggagaatggctggctgtgtacataacaaagacacat 60
||||||| ||||| |||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 201 ctacttagttaggggctaatatagggagaa----tggctgtgtacataaccaagacacat 256
Query: 61 gaaacccaaacaaatcgttctgttctccttgatagtggctacaacactggacacccaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaaacccaaacaaatcgttctgttctccttgatagtggctacaacactggacacccaccc 316
Query: 121 ctgctgcccagataatgcccttctccctgaatagagacaaaccccaggagtcgagaaaag 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 317 ctgctgcccagataatgcccttctccctgaatagagacaagccccaggagtcaagaaaag 376
Query: 181 cacatccaactatcaactctgctgtggaccaataagggaccttaccttgcatcgttgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cacatccaactatcaactctgctgtggaccaataagggaccttaccttgcatcgttgctt 436
Query: 241 tggttggttctgagaacagaggaatgagcaagaggtagataaggtagacaaaggagagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tggttggttctgagaacagaggaatgagcaagaggtagataaggtagacaaaggagagcc 496
Query: 301 cattgtaccggaacgcacatgctgtgattgggaagagaggagagaggaacatggcattaa 360
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 497 cattgtaccggaacgcacatgctgtgattgggaggagaggagagagaaacatggcattaa 556
Query: 361 tgacagcaggcgacacaaca-gccccgtgtcgatcatatcaaaactcacagggcttccat 419
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 557 tgacagcaggcgacacaaaaagccccgtgtcgatcatatcaaaactcacagggcttccgt 616
Query: 420 ctctcaagcagtagttctcaaccttgccaacactgtgaccctgtcatacagttcctcatg 479
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctctcaaccagcggttctcaaccttgccaacactgtgaccctgtcatacagttcctcatg 676
Query: 480 ttacagtgacccctcaaccatacaattatcatcatggctacttcataactgtaactttgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttacagtgacccctcaaccatacaattatcatcatggctacttcataactgtaactttgc 736
Query: 540 tactgttatgaatggtaatgtaaatatctggaatttccggtgc 582
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 737 tactgttatgaatggtaatgtaaatatctggtatttccggtgc 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 979
Length adjustment: 10
Effective length of query: 572
Effective length of database: 969
Effective search space: 554268
Effective search space used: 554268
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_f22.g1 MSMg01no487_f22.g1 CHROMAT_FILE:
MSMg01no487_f22.g1 PHD_FILE: MSMg01no487_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:58 2005
(599 letters)
>mm_chr18_63642856_63643853
Length = 998
Score = 986 bits (510), Expect = 0.0
Identities = 534/544 (98%), Gaps = 5/544 (0%)
Strand = Plus / Minus
Query: 1 tttagtgacaaaagccaacagtcagctaaggcacgcgctctgatctgcagcaggaatgga 60
|||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct: 543 tttagtgacaaaagccaacagtcagctaaggcgcgcgctctaatctgcagcgggaatgga 484
Query: 61 tatcttgcacatcaagcaattgcatgtgcgtatgtgtttgctatgagaagaaggggctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tatcttgcacatcaagcaattgcatgtgcgtatgtgtttgctatgagaagaaggggctgg 424
Query: 121 tgtgaactggagctagggctggtgtgaactggagctagggaagaagattacaataacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtgaactggagctagggctggtgtgaactggagctagggaagaagattacaataacaaa 364
Query: 181 tgacacacctgagtgtggctctaaaacacaagagaggacattattttgtctgatgcacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 363 tgacacacctgagtgtggctctaaaacacaagagaggacattattttgtctgatgca-at 305
Query: 241 agactgatattatgatgaaagaacaatagaaatatataatcaccctccttacctaaattg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agacagatattatgatgaaagaacaatagaaatatataatcaccctccttacctaaattg 245
Query: 301 cccttttcaatgtcttccccttttgtttagtttaattatttataattgattgattgattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cccttttcaatgtcttccccttttgtttagtttaattatttataattgattgattgattg 185
Query: 361 ----attcattcattcattcattcatatattcattcaattagttgtattttttgattttc 416
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 184 attcattcattcattcattcattcatatattcattcaattagttgtatttttttattttc 125
Query: 417 tttgaaacaaggttttgttatgtatcctaggctacccttgaactctgtatgtaggccagg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tttgaaacaaggttttgttatgtatcctaggctacccttgaactctgtatgtaggccagg 65
Query: 477 ctagacttgaactcttaagttcctaagactcttaagatcagtagttcacaagtaaaacat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctagacttgaactcttaagttcctaagactcttaagatcagtagttcacaagtaaaacat 5
Query: 537 gaat 540
||||
Sbjct: 4 gaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space: 581932
Effective search space used: 581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
