BAC Information

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BAC

Clone NameMSMg01-487H24
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487H24.T7 (MSMg01no487_h24.b1)MSMg01-487H24.TJ (MSMg01no487_h24.g1)
ACCAG566449AG566450
length1,333788
length of high quality
(start - end)
---364 (75 - 438)
definitionCHROMAT_FILE: MSMg01no487_h24.b1 PHD_FILE: MSMg01no487_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:08 2005CHROMAT_FILE: MSMg01no487_h24.g1 PHD_FILE: MSMg01no487_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGTCGCGTTGTATTGATTTGGTGGGGTGATAGAACTCGGCAATTAGTTCT
CGATTTCTGAGGAAGCTGAGTGCGCCATGGCGACCATTCACCTTCTCTCC
AGAGGTAGAATTTGCTGCTACTAATACCCCACGCTCGAGATCGTGCTCTA
CGTGCGATGAGGACCTACGGTTTTGCATGCCTGCGTTACAGGAAGGAGAC
CCCCTCTATGATGAACGCAGTTATAGTATGACTGCGACGCGCAGGATGGG
AGTAGATGCTATGCCGAAGTAGTTGTAGCAACCCGCTGCTCGCGCGCCTT
CATCCCACTGAATTGATGCACCGACACGGAGTGTGATGGTTCTCTGCNGG
CATGGGCGGCCGCGTTGATAGCTGTATGTTCTGGATGGATTTGTGCTGGG
ATGGTCCTGATATGATATGTTGTCGCTGCGTGTGTGGTGTGTGTTTTGCG
TGCTATTGTACGTCTGGCTCTGTGGTGCCTGAGCATGCCTATGTGTCTCG
ACTGCCTTACTCTGTTTTTGTATTACCTCTTGAAGTACCTCTTCTGTTCG
GTTTCCCCTGCGGAGGGAGTTCACTCCGCCACCTCGAGTAACTCCTTAAC
GACGCAATAACCATACTGTTATCCATGACCTCTCTGCCCCCTTTATCGCT
ATGCTTATTGTACTGCCAACACCGCCTAGCTTACACGCCAGTCCTCCGTC
GGTATTAATATGTACGACCGTGTGTATCGTCGTGTATTATGCTGCTATAT
GGTTGCATGGTGCTGATCACACCCCTTATGCTGTGATGCGTTGAGTTGCT
GTGTGCTGTGCATGTGCTGTGATCTGCTACTAGACGCTCTCGGTTTTGTT
GCTTTATATGTGAATATTATGACCTGCGCTCTGTGCGTGGCTGTCATGCG
TGTCCGCACGTCGATGAGATGAGAATATTCTTCCGTGCGTTCGTTGTGTG
GCCGGTCCTACTGGTTGTATCACATCGATGTGTGTTGATGTTTTGACCGT
CCTGTTTCTCTTGTCACTTCGTCTTATATTTTCCTCCACGCTTTCCTCGT
AACCTCTCTTTGTGATGTTCCGTTCTATACAGAATGCGCCTCTCGTCTCC
GCTGCCGCCCACGTTGTTGTTATCACTCTACACTCGTCATTGCTACTGCC
ATATAATATCATGATCTTGACCACTCTCCCGNCGACATGCGATTGTTGGT
TGCAGATATGTGCGCGACGCGNGCTCATTCTGTGACATTTTGACTGTATC
GTGTGAGTTGGCGACCGCTGGCGATTAGCCTCATGTGTTATGCGTGATGT
GANCTCTCACGCTCTCATCTCTTCTCTGTTGTC
CCAATGCAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCC
ACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATA
CCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAA
GAGGAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTC
AGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTG
GAATTTCTACTTCATGTTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCT
GTATAGCCCTGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTAATACTTCTCCTGTGATTGCCGTA
ACTTGCAATCTAGAGGGCTTATGTTTGATTCCTGTAATCTTTTTTTCTAA
ATCTTTTTCCCTTTTATATTTTATTTTATTTTATTTTATTTTATTTTATT
TTATTTTATTTTATTTTATTTTATTTTATTTTAANCTAATTNNANNNGGG
GGNNNNNNNAANNNNTTCTTTTTTTTCTCCCCCCTTTCTTTNNCCCACAT
TTCCCAAAATTCTTCCCCTTTACTCATAAATATTCTACTCTTTTCTTCCC
CACTCTCATTTTATAATTTTTCCCCCACACCCGCCTTTCCTTTATTACCC
TATTTATAACTCTCTATCACACTACTTATATTCCATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_h24.g1 MSMg01no487_h24.g1 CHROMAT_FILE:
MSMg01no487_h24.g1 PHD_FILE: MSMg01no487_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:08 2005
         (364 letters)



>mm_chr18_40467476_40468238
          Length = 763

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 763
Length adjustment: 9
Effective length of query: 355
Effective length of database: 754
Effective search space:   267670
Effective search space used:   267670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)