Query= MSMg01no487_n01.b1 MSMg01no487_n01.b1 CHROMAT_FILE:
MSMg01no487_n01.b1 PHD_FILE: MSMg01no487_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:32 2005
(679 letters)
>mm_chr18_17972586_17973664
Length = 1079
Score = 1266 bits (655), Expect = 0.0
Identities = 670/675 (99%)
Strand = Plus / Plus
Query: 5 gaattccactctttgctaaaatctatagtgtgtacgattcattgacatatttaatatcat 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactctatggtaaaatctatagtgtgtacgattcattgacatatttaatatcat 264
Query: 65 agaaccaaagatgaatctgtttgaaaacagcaacagagattgcctataaaaacacagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaccaaagatgaatctgtttgaaaacagcaacagagattgcctataaaaacacagaaa 324
Query: 125 gataaaagtcttcaaacaagatatctcagagccgaggcatattttacttgcctgataaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gataaaagtcttcaaacaagatatctcagagccgaggcatattttacttgcctgataaaa 384
Query: 185 tgaatttaaatttccttaagaagtgagggagagttcagaaaaatatttgaaaagaatatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaatttaaatttccttaagaagtgagggagagttcagaaaaatatttgaaaagaatatc 444
Query: 245 tctcataaaaattccatataggctagtaaataaaaataattgattaaaagcatgtatgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcataaaaattccatataggctagtaaataaaaataattgattaaaagcatgtatgct 504
Query: 305 tatattcaaaaacacagtaagcccatcacaacaaatatggagaaaattataggaaatctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatattcaaaaacacagtaagcccatcacaacaaatatggagaaaattataggaaatctg 564
Query: 365 ttattatattattgcttaaaagcagagataagaagtaatatttaaaaaaagctaaacaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttattatattattgcttaaaagcagagataagaagtaatatttaaaaaaagctaaacaga 624
Query: 425 aaatacatttttctcacaataacataatgaagcaatctcattggaaaaatagaaaatgtc 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatatatttttctcacaataacataatgaagcaatctcattggaaaaatagaaaatgtc 684
Query: 485 aacaaattgttctatatacaatgattttaacatagaattattgccttagcaaaagtatct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacaaattgttctatatacaatgattttaacatagaattattgccttagcaaaagtatct 744
Query: 545 tagaaaactgaaaaccataatcttttccaatatttttattacttttaaaatttctaatta 604
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tggaaaactgaaaaccataatcttttccaatatttttattacttttaaaatttctaatta 804
Query: 605 catcatttcacccatacttttcttcctccttctgaccttgatttctgtcctctacatcac 664
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 805 catcatttcacccatacttttcttcttccttctgaccttgatttctgtcctctacatcac 864
Query: 665 acacaggtgattgat 679
|||||||||||||||
Sbjct: 865 acacaggtgattgat 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_n01.g1 MSMg01no487_n01.g1 CHROMAT_FILE:
MSMg01no487_n01.g1 PHD_FILE: MSMg01no487_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:32 2005
(618 letters)
>mm_chr18_18075163_18076180
Length = 1018
Score = 1143 bits (591), Expect = 0.0
Identities = 612/619 (98%), Gaps = 2/619 (0%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgtactccatttattaatagggtta-tctgattttctggagtccaccc 59
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct: 999 tttgtttagctctgtactccatttattaatagggttact-tgattttctggagtccatcc 941
Query: 60 tttgatatatatatatatatatatatatatatatatatatatatatatatatatatatgt 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 940 tttgagatatatatatatatatatatatatatatatatatatatatatatatacatatat 881
Query: 120 acatatatactggatattagtcccctatctgatttaggattagtaaaaatcctttcccaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 acatatatactggatattagtcccctatctgatttaggattagtaaaaatcctttcccaa 821
Query: 180 tctgttggtggcgtttttgtcatattgacattgtcttttgccttacagaagctttgcaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tctgttggtggcgtttttgtcatattgacattgtcttttgccttacagaagctttgcaat 761
Query: 240 tttatgaggtcccatttgtcagttctccatcttaagactgctgtatctcttgcattttgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tttatgaggtcccatttgtcagttctccatcttaagactgctgtatctcttgcattttgg 701
Query: 300 tagaagtaatttaaaaatgcttaggtattttgtcttatggtttttatgagcattatagat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tagaagtaatttaaaaatgcttaggtattttgtcttatggtttttatgagcattatagat 641
Query: 360 ataatcctttgaaataacttagaaaaactttatggtagacataaaaataattgagagtag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ataatcctttgaaataacttagaaaaactttatggtagacataaaaataattgagagtag 581
Query: 420 tgttattttgtgtcatctcaaatttctttatcaccatttttttaaatctacttgcagaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgttattttgtgtcatctcaaatttctttatcaccatttttttaaatctacttgcagaga 521
Query: 480 tattctgcttttttcagtttaagggtggatgattgtatttaatgtcctaaattaatatta 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tattctgcttttttcaatttaagggtggatgattgtatttaatgtcctaaattaatatta 461
Query: 540 tactatagttaatattaataatatccccttcctttgagaagacacaataatgggcttcta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tactatagttaatattaataatatccccttcctttgagaagacacaataatgggcttcta 401
Query: 600 tagttttctaggaacagaa 618
|||||||||||||||||||
Sbjct: 400 tagttttctaggaacagaa 382
Score = 97.4 bits (50), Expect = 3e-24
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 64 atatatatatatatatatatatatatatatatatatatatatatatatatatat 117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 atatatgtatatatatatatatatatatatatatatatatatatatatatatat 934
Score = 95.5 bits (49), Expect = 1e-23
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 65 tatatatatatatatatatatatatatatatatatatatatatatatatatat 117
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tatatatgtatatatatatatatatatatatatatatatatatatatatatat 932
Score = 91.6 bits (47), Expect = 2e-22
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 65 tatatatatatatatatatatatatatatatatatatatatatatatatatatgtacata 124
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 872 tatatatgtatatatgtatatatatatatatatatatatatatatatatatatatatata 931
Query: 125 tat 127
|||
Sbjct: 932 tat 934
Score = 91.6 bits (47), Expect = 2e-22
Identities = 59/65 (90%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 64 atatatatatatatatatatatatatatatatatatatatatatatatatatatgtacat 123
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 873 atatatgtatatatgtatatatatatatatatatatatatatatatatatatat----at 928
Query: 124 atata 128
|||||
Sbjct: 929 atata 933
Score = 85.8 bits (44), Expect = 9e-21
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 69 tatatatatatatatatatatatatatatatatatatatatatatatatgtacatatata 128
||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 872 tatatatgtatatatgtatatatatatatatatatatatatatatatatatatatatata 931
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 46
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 11
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
