Query= MSMg01no487_o18.b1 MSMg01no487_o18.b1 CHROMAT_FILE:
MSMg01no487_o18.b1 PHD_FILE: MSMg01no487_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:40 2005
(683 letters)
>mm_chr18_42222669_42223746
Length = 1078
Score = 1060 bits (548), Expect = 0.0
Identities = 648/714 (90%), Gaps = 57/714 (7%)
Strand = Plus / Plus
Query: 1 cagccaatagtctagctcctactaaggttagcttaaggtatactcatccaggtagccacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cagccaatagtctagctcctactaaggttagcttaaggtatactcatccaggtagccacg 250
Query: 61 tgtatctacttaaatggtacaccacatttctgtgctgtgaacatggaggaagggagcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 251 tgtatctacttaaatggtacaccacatttctgtgctgtgaacatggaggtagggagcatc 310
Query: 121 ctgggggctgtgcggatgtttcatttagtaaagcaagcatgagtactagagttcaatccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgggggctgtgcggatgtttcatttagtaaagcaagcatgagtactagagttcaatccc 370
Query: 181 cagaacctatgtcaaaatgctgggcatggtgctacaccagggaagcagaggtagagagtc 240
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 371 cagaacctatgtcaaaatgctgggcatggtgctacaccagaaaagcagaggtagagagtc 430
Query: 241 cctgggacttgttgatctgattggtgaact--agcccaggagagactctctctctctgtc 298
||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 431 cctgggactcgttgatctgattggtgagctctagcccaggagagacactctctctct--- 487
Query: 299 tctctgtctctctctctctctctccctccctccctccctctctctctcctctctttctct 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 488 -------ctctctctctctctctc--tccctccctccctctctctctcctctctttctct 538
Query: 359 cattctctcccccctctctctatacatataaaacatat---------------------- 396
| |||||||||||||||||||||||||||||
Sbjct: 539 c--------ccccctctctctatacatataaaacatatgtgtgtgtgtatgtatatatat 590
Query: 397 ------ataatttttaatttttttattttctgtgcactggtgttttgcctacatgtatgt 450
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 591 acatacataatttttaatttttttattttctgtgcactggtgttttgcctacatgtatat 650
Query: 451 aaatgtgtggtgttagatcctctgaaactggagttacagacacttataagccgccatgtg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaatgtgtggtgttagatcctctgaaactggagttacagacacttataagccgccatgtg 710
Query: 511 ggtgctgggaattgaatctaggtcctttggaaaagcaaccactaagccatctctccagcc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggtgctgggaattgaatctaggtcctttggaaaagcaaccactaagccatctctccagcc 770
Query: 571 caagagaccctgtcttaaaggaagtagatggccttgctaaggattacacctgaggtatcc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 caagagaccctgtcttaaaggaagtagatggccttgctaaggattacacctgaggtatcc 830
Query: 631 -catgcccctcccctcccccccatgcacaggtactcacccacgcatccatacat 683
| ||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct: 831 tc-tgcccctccccgcc-----atgcacaggtactcacccacgcatccacacat 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1078
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1068
Effective search space: 718764
Effective search space used: 718764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_o18.g1 MSMg01no487_o18.g1 CHROMAT_FILE:
MSMg01no487_o18.g1 PHD_FILE: MSMg01no487_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:40 2005
(688 letters)
>mm_chr18_42339836_42340923
Length = 1088
Score = 1315 bits (680), Expect = 0.0
Identities = 686/688 (99%)
Strand = Plus / Minus
Query: 1 ctgttagacagtccatttagtctgtgtaacaacccatatcaatagttaacagccaatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ctgttagacagtccatttagtctgtgtaacaacccatatcaatagttaacagccaatgaa 829
Query: 61 ctaataagtggaaaccatttccagatgacacttacaggtccaatcacctaatagtttaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ctaataagtggaaaccatttccagatgacacttacaggtccaatcacctaatagtttaca 769
Query: 121 gattaaaatggacaagtgtcagtggctcggtgaagctaacagaaattagaataactcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gattaaaatggacaagtgtcagtggctcggtgaagctaacagaaattagaataactcctg 709
Query: 181 atctgagaaatagaataaaatcctggtaagaataggaaacagccagtgtatacccaaaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 atctgagaaatagaataaaatcctggtaagaataggaaacagccagtgtatacccaaaag 649
Query: 241 attttctaccattattatcgaaagggatatctgttattcaataatattctagtattctag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 attttctaccattattatcgaaagggatatctgttattcaataatattctagtattctag 589
Query: 301 gtccatgttaagtcctgaaatgagatgaacataacaagcatcaattatttcaacaattgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtccatgttaagtcctgaaatgagatgaacataacaagcatcaattatttcaacaattgc 529
Query: 361 ttactgtttttgacaagggagtaaaagccagttaccataatcaatactaacagaattgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttactgtttttgacaagggagtaaaagccagttaccataatcaatactaacagaattgtg 469
Query: 421 tcagggtcagctttggcaatgctcaacaaagaacacaattttgatgtggctaggtaacgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tcagggtcagctttggcaatgctcaacaaagaacacaattttgatgtggctaggtaacgg 409
Query: 481 cgattttctaactccgagttttgagaattgtttatccattccctgtccctggttgcaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cgattttctaactccgagttttgagaattgtttatccattccctgtccctggttgcaggc 349
Query: 541 agacaatgctgtgttgaaattggtggtgcagggttgtgaatctatttaagatatgaagtc 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 348 agacaatgctgtgttgaaattggcggtgcagggttgtgaatctatttaagatatgaagtc 289
Query: 601 gttctccgaatatctgagaatgctggttttcttttatgtgcaattgacaggtttctgggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gttctccgaatatctgagaatgctggttttcttttatgtgcaattgacaggtttctgggg 229
Query: 661 tctgctttgtcccatgtgtcttgagtgt 688
||||||||||||||||||||||||||||
Sbjct: 228 tctgctttgtcccatgtgtcttgagtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
