BAC Information

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BAC

Clone NameMSMg01-487P13
Chromosome18 (Build37)
Map Location 79,509,003 - 79,509,417
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc14a2, EG620155, Setbp1, LOC100039242
Downstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487P13.T7 (MSMg01no487_p13.b1)MSMg01-487P13.TJ (MSMg01no487_p13.g1)
ACCAG566807AG566808
length7531,327
length of high quality
(start - end)
517 (46 - 562)---
definitionCHROMAT_FILE: MSMg01no487_p13.b1 PHD_FILE: MSMg01no487_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:44 2005CHROMAT_FILE: MSMg01no487_p13.g1 PHD_FILE: MSMg01no487_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATTTATTTCACCACCCCATTTTTAAATTGGGTTATTTGGTTTGT
TGGTGTCTAATTTATTGATTTTTTAAATGTATTTTGGGTATCAGCCTTCT
TTTGGACATAGGGTTTGTAAAGATCTTTTCCCATTCTGTAGGCTGCCGTT
TTGTCTTATTGATGGTGTCCTTGTTCCATGAGGTCCTATTAATAATTGTT
GATATCAGTGCTGAGCTGTTGGTGTTCTATACAGGAAGTTGTCTCCTGTG
CCAATGCATTTAAGACTATTAGCCACTTTCTCATCTATCATATTTAGTGC
CAAATATATTCTTATCTCTTACAGAGGTTTAGCTATATCATATAAAATCT
GAAATAATGGATATTAAATTCTCTGGGACACCAGATATAAATCCTATTAA
TATTGAACTGAATTTACAGAATAACTGGAGAGAATATTTGTAAGTTTTGA
TATTATTATGCTCAGATTATGGATATTTTTCATTTTCCATTGCAGTTTAA
TTTTTTTTGCTGAAGTTCCAGAATGCAAAATAAAGACATGAATGCTAACA
TCATTTTATCACATAATAGCCAAGTTGTTTCATAGACTCATAAAATATCT
TCTAAAAAGTATTAATTCTCGTGCTTATCCAAAATAAGATCACAGGTGAT
CCCTTTTTGGTAAAAATTTGTATTATTCACCTCAAATTCATTCATTACCT
GGT
GTGCCTCGCGCCCCGGCCGTTGCTGCGGGCAGTACGACCTTATATCCTCC
TCCACAGAGTTTAATACTATTCCCCGCGGGAGCATATCTCTACACTTAAA
TCCCACCACGACACCCAACGACTATGCAACACACAAACTAAAACCCACAA
ACGCNACCATATATACAAATATATTATTCTTTATTCAATACACAATGTAA
TAACACAATATAAANAGACTCCGCAGTAGAACACCGCTGAGACGAAGGGC
GTTTTCGGCACCGAGGCCGAGCGAATTTCTTCTTTTGTCGCCACCGCCAC
ACGATTATAATTATCCAAACAACACTTTTTAAGAAATATATAAGTAATAG
AAACATAACTTTACGCCCCCCGTCGTGACGAATATTAGTAATAAAATAAT
CCACACACNCCATTATCTATATACACTGTTCCTCTCTTTTCTTCNCGACA
CACCTAAGTAATCGGCAACATGCTGAAGCCCGCTCATCACTCATATATTA
TATCACAATATCAACACAACGACGCAAAGCATGCTTCAACAAACTCGACC
ACGTATTATATCAACTCAAACACAATAACAACCACACACAAGATTCGAAT
ATAACAAACTAAGAATAAACGAAAATCGTATCATTTTCATCATCTAATAG
TACGCCCACTCTCTTTACTCCTATTGTGACGGCGCCGGCTAGTCTNGTGT
CTCTCGACTACTGACAGTACTCGCGCGTGTGGTTTCTTTACATTATTGTC
CACGATGCCGGTGGACGGTGACGTGATAATAAAGACAAAAATAATTAATG
ATCTAGCGACGCCGGGGCGCATGTGTGAGTATTGATTTATTGCGATCTAG
GTGACGAAGGAGGAAGCACATCATAGTGAAGAGACATTATTATGTTACCT
AACACACACAGTATGTTTGAGTTATTGTGATATCACACGCCGATCGCTGA
ACAGATTATGTAATTCTCTGTCGTCATCNCGATCTCGCCGACGATTGTGA
TATACATATTGACCACTATAGTAGTGGAGACGCGCTACGGCGTGGAGAGC
GGCGCGAGTGTGTATACATAAATCTATAGAGCGAGNGCACTGACCATATA
AGCACTCACAGTGGTGAGAGATGTGAGAGCGGTCGAACATAGACACGAAC
TCAATATATCGACGCTCGTGGGTGNTTTGTATAATATTGCATGCAAGGTG
GATCGGTAGTAGAGTGAATGACATCTGATCTACATCGTAGAATGCAGAGT
CCGCAGCTGCGAGCGTTAGGCGCGGACGTCCGCTAAGTATAAGCGTCGCA
CGCCGAAACATTTCCATAGTAGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_p13.b1 MSMg01no487_p13.b1 CHROMAT_FILE:
MSMg01no487_p13.b1 PHD_FILE: MSMg01no487_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:44 2005
         (517 letters)



>mm_chr18_79508499_79509417
          Length = 919

 Score =  748 bits (387), Expect = 0.0
 Identities = 408/415 (98%), Gaps = 2/415 (0%)
 Strand = Plus / Minus

                                                                       
Query: 105 ttttggacatagggtttgtaaagatcttttcccattctgtaggctgccgttttgtcttat 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 ttttggacatagggtttgtaaagatcttttcccattctgtaggctgccgttttgtcttat 860

                                                                       
Query: 165 tgatggtgtccttgttccatgaggtcctattaataattgttgatatcagtgctgagctgt 224
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tgatggtgtccctgttccatgaggtcctattaataattgttgatatcagtgctgagctgt 800

                                                                       
Query: 225 tggtgttctatacaggaagttgtctcctgtgccaatgcatttaagactattagccacttt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tggtgttctatacaggaagttgtctcctgtgccaatgcatttaagactattagccacttt 740

                                                                       
Query: 285 ctcatctatcatatttagtgccaaatatattcttatctcttacagaggtttagctatatc 344
           ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 739 ctcttctatcatatttagtgccaaatatatccttatctcttacagaggtttagctatatc 680

                                                                       
Query: 345 atataaaatctgaaataatggatattaaattctctgggacaccagatataaatcctatta 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atataaaatctgaaataatggatattaaattctctgggacaccagatataaatcctatta 620

                                                                       
Query: 405 atattgaactgaatttacagaat-aactggagagaatatttgtaagttttgatattatta 463
           |||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 atattgaactgaatttatggaattaactggagagaatatttgtaagttttgatattatta 560

                                                                  
Query: 464 tgctcagattatggatatttttcattttccattgcagtttaattttttt-tgctg 517
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 tgctcagattatggatatttttcattttccattgcagtttaatttttttctgctg 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space:   460863
Effective search space used:   460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)