BAC Information

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BAC

Clone NameMSMg01-488D08
Chromosome18 (Build37)
Map Location 82,104,160 - 82,220,726
singlet/doubletdoublet
Overlap genenone
Upstream geneAtp9b, Sall3, LOC665124, LOC100039458, LOC100040871
Downstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488D08.T7 (MSMg01no488_d08.b1)MSMg01-488D08.TJ (MSMg01no488_d08.g1)
ACCAG566987AG566988
length736749
length of high quality
(start - end)
697 (40 - 736)652 (77 - 728)
definitionCHROMAT_FILE: MSMg01no488_d08.b1 PHD_FILE: MSMg01no488_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:03 2005CHROMAT_FILE: MSMg01no488_d08.g1 PHD_FILE: MSMg01no488_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,104,160 - 82,104,850)(82,220,206 - 82,220,726)
sequence
GATAAGTTGCGGCGCTGAAGGACTCACTATTCGGAGAGGATCCGCGGAAT
TCCTGATTTTCTTCTTGGACACAGTCATGTCTTCTGTGCAGTTTCAAAGG
GGCTTCTCTCTGATTATGTCCCCGGACTTGCTTAGTTTCGTATCTGAATT
AAGTGTCTTCGTCATCTCCTTAGCCCAATAAGAGAATATGAATTCCTAAG
ACAGGCCTGTGGCTGTGCATGTCAGTGAAGCAAACGCAGTGTAGCATAGA
GGAATAGGCAAGGTAACTGCAGTAGAGTCATCAGGCAGCAGCTAGGGACA
CTTGCCCAGCAACACTGAGAAGTCAACTCAAGCTAGCACAATGCTCAGTG
TGCGGAGTTTAGATTAAGCAGAGGAAGCTCCTCCAGAGCCTGCCTGTGCT
CGCCCATCCTGAGCTGAAGCTCACAGCCACCCAGAGATGTATTTCCTTAT
GACTCGAAGGCTTGGGTGAGCACATTTAGGCCCTCCTCCTCTGGTGAGTG
CTGGAAAACTGGTTATGCCTGCCTGGGATGGACTGCCTAGACCTGAGCTG
ACCAAAGTCGAAACGCAAGCCATCAAAATCCCACTCCAAAAAGAAGTTTG
AAGCACTACCCAAAACAGCTCTGTAGGCTGACCCTGGAACACAGGAAACA
GCAAGACTGTGTATCTGTCTGAATGCATACAATGTATCTTTTCTTTACTA
CTAAAGGCAGAGTATACACATCCATTTGCTACATTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTAGGGTAGCTGTGCCTGTGA
GCATTTTAGTCGCTTATGACCACCATCCTGTGACAGGAGAACACAGCCTG
AGGTACCTGTTTGATTAAATACATGCTCAGATATTAAGAATTCTCAGAGG
ACCCAGGCTGTGATACTGCAATTTCCACCCAAGGATAAAAGTAGCAGGCA
TGAAAACAGTGTAATGAGCAAGTCGCCATGGGGACGGTTGAGAATATTTG
CTGGTATCCCTCTGCCGGAGGACATTCATCTGTTTGTATCAAGCAATTCC
TGGTTGCTATGATTCTGACAGAAATTCCAGAGATTAAAAAATGGTGGGAT
GAATTTGAAAATTGCTCTTTCTAACTCTATGAAGAATTGGGTTGGAATTT
TGATGGGGATTGCATTGAATCTGTAGATTGTTTTCAGCAAGATAGCCCCT
TTAACTATATTAATCCTCCCAGTCTATGATAGTGAAAACTGTTTTCAACA
ATAAAAGAACTTCTGGGGAAATCAGCATCTCAGACCTCAAGCTGTACTAC
AGAGAAATTGTGATTAAAAACTGCATGGTATTGCTACAGTGACAGACAGA
TAGATCAATGGAATAGAGTTGAAGACCCAGAAATGAACCCACACACCTAT
GGTCACTTGATCTTTGACAAAGGAGCTAAAACCATCCAGTGGAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_d08.b1 MSMg01no488_d08.b1 CHROMAT_FILE:
MSMg01no488_d08.b1 PHD_FILE: MSMg01no488_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:03 2005
         (697 letters)



>mm_chr18_82103954_82105051
          Length = 1098

 Score = 1282 bits (663), Expect = 0.0
 Identities = 684/691 (98%), Gaps = 1/691 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcctgattttcttcttggacacagtcatgtcttctgtgcagtttcaaaggggctt 66
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcctgactttcttcttggacacagtcatgtcttctgtgcagtttcaaaggggctt 266

                                                                       
Query: 67  ctctctgattatgtccccggacttgcttagtttcgtatctgaattaagtgtcttcgtcat 126
           ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 267 ctctctgattatgtccccggacttgcttagttttgtatccgaattaagtgtctttgtcat 326

                                                                       
Query: 127 ctccttagcccaataagagaatatgaattcctaagacaggcctgtggctgtgcatgtcag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctccttagcccaataagagaatatgaattcctaagacaggcctgtggctgtgcatgtcag 386

                                                                       
Query: 187 tgaagcaaacgcagtgtagcatagaggaataggcaaggtaactgcagtagagtcatcagg 246
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgaagcaaacgcagtgtagcatagaggaataggcaaggtaactgcagtagagtcatcagg 446

                                                                       
Query: 247 cagcagctagggacacttgcccagcaacactgagaagtcaactcaagctagcacaatgct 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagcagctagggacacttgcccagcaacactgagaagtcaactcaagctagcacaatgct 506

                                                                       
Query: 307 cagtgtgcggagtttagattaagcagaggaagctcctccagagcctgcctgtgctcgccc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cagtgtgcggagtttagattaagcagaggaagctcctccagagcctgcctgtgctcgccc 566

                                                                       
Query: 367 atcctgagctgaagctcacagccacccagagatgtatttccttatgactc-gaaggcttg 425
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 567 atcctgagctgaagctcacagccacccagagatgtatttccttatgactcagaaggcttg 626

                                                                       
Query: 426 ggtgagcacatttaggccctcctcctctggtgagtgctggaaaactggttatgcctgcct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggtgagcacatttaggccctcctcctctggtgagtgctggaaaactggttatgcctgcct 686

                                                                       
Query: 486 gggatggactgcctagacctgagctgaccaaagtcgaaacgcaagccatcaaaatcccac 545
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 687 gggatggactgcctagacctgagctgaccaaagtcaaaacgcaagccatcaaaatcccac 746

                                                                       
Query: 546 tccaaaaagaagtttgaagcactacccaaaacagctctgtaggctgaccctggaacacag 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tccaaaaagaagtttgaagcactacccaaaacagctctgtaggctgaccctggaacacag 806

                                                                       
Query: 606 gaaacagcaagactgtgtatctgtctgaatgcatacaatgtatcttttctttactactaa 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaaacagcaagactgtgtatctgtctgaatgcatacaatgtatcttttctttactactaa 866

                                          
Query: 666 aggcagagtatacacatccatttgctacatt 696
           |||||||||||||||||||||||||||||||
Sbjct: 867 aggcagagtatacacatccatttgctacatt 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1098
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1088
Effective search space:   747456
Effective search space used:   747456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no488_d08.g1 MSMg01no488_d08.g1 CHROMAT_FILE:
MSMg01no488_d08.g1 PHD_FILE: MSMg01no488_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:03 2005
         (652 letters)



>mm_chr18_82220206_82221257
          Length = 1052

 Score =  946 bits (489), Expect = 0.0
 Identities = 513/521 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtagggtagctgtgcctgtgagcattttagtcgcttatgaccaccatcctgtgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaggtagggtagctgtgcctgtgagcattttagtcgcttatgaccaccatcctgtgacag 462

                                                                       
Query: 61  gagaacacagcctgaggtacctgtttgattaaatacatgctcagatattaagaattctca 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gggaacacagcctgaggtacctgtttgattaaatacatgctcagatattaagaattctca 402

                                                                       
Query: 121 gaggacccaggctgtgatactgcaatttccacccaaggataaaagtagcaggcatgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaggacccaggctgtgatactgcaatttccacccaaggataaaagtagcaggcatgaaaa 342

                                                                       
Query: 181 cagtgtaatgagcaagtcgccatggggacggttgagaatatttgctggtatccctctgcc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 341 cagtgtaatgagcaagtcgccatggggacagttgagaatatttgctggtatccctctacc 282

                                                                       
Query: 241 ggaggacattcatctgtttgtatcaagcaattcctggttgctatgattctgacagaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggaggacattcatctgtttgtatcaagcaattcctggttgctatgattctgacagaaatt 222

                                                                       
Query: 301 ccagagattaaaaaatggtgggatgaatttgaaaattgctctttctaactctatgaagaa 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 221 ccagagattaaaaaatggtgggatgaatttgagaattgctctttctaactctatgaagaa 162

                                                                       
Query: 361 ttgggttggaattttgatggggattgcattgaatctgtagattgttttcagcaagatagc 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 161 ttgggttggaattttgatggggattgcattggatctgtagattgttttcagcaagatggc 102

                                                                       
Query: 421 ccctttaactatattaatcctcccagtctatgatagtgaaaactgttttcaacaataaaa 480
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 101 ccctttaactatattaatcctcccagtccatgatagtgaaaactgttctcaacaataaaa 42

                                                    
Query: 481 gaacttctggggaaatcagcatctcagacctcaagctgtac 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  gaacttctggggaaatcagcatctcagacctcaagctgtac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)