Query= MSMg01no488_g19.b1 MSMg01no488_g19.b1 CHROMAT_FILE:
MSMg01no488_g19.b1 PHD_FILE: MSMg01no488_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:21 2005
(639 letters)
>mm_chr18_43099465_43100503
Length = 1039
Score = 1122 bits (580), Expect = 0.0
Identities = 625/640 (97%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 1 tttcttcttgcactgcgggtatgtcactcttctgccttctgccaccagtggtttctgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tttcttcttgcactgcgggtatgtcactcttctgccttctgccaccagtggtttctgatg 259
Query: 61 ccaagacagctgagttgtatcgatgctcacctcgacaatgagccacctttcttctgctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccaagacagctgagttgtatcgatgctcacctcgacaatgagccacctttcttctgctgt 319
Query: 121 tctcaaggaatttcttttgggatttggctcttaacagtttggccacaataaccaagaggt 180
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 320 tctcaaggaatttcttttgggatttggctcttaatggtttggccacgataaccaagaggt 379
Query: 181 gggcctactagcatttaaactaacttcgtttctgtcaggtttgtggctgcataagttact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggcctactagcatttaaactaacttcgtttctgtcaggtttgtggctgcataagttact 439
Query: 241 ttagtaaaacagcaaatatgggaagtttcataaccactgttttcttcttccaaccctcat 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct: 440 ttagtaaaacagcaaatatgggaagtttcataaccactgttttcttctcccatcccccat 499
Query: 301 ccctacatt-ccccttttgtgcactgggtctcattatgtaacctggttggaacacattat 359
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctacattcccccctttgtgcactgggtctcattatgtaacctggttggaacacattat 559
Query: 360 gtagatcatgctggcctccacctcacagcagtcctcctgcttctgcctctcaagtgtggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 560 gtagatcatgctggcctccacctcacagcagtcctcctgcttctgcctctctagtgtgag 619
Query: 420 gattacatatgtacacgaccacatctggctttcaatgaacctttctctctcttgtgagac 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 gattacatatgtacacgaccacatctggctttcaatgaacctttctctctcctgtgagac 679
Query: 480 tctcagttcatgatttgctaatcttctgtccctgccttcttaggctggttatcttaccac 539
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctcatttcatgatttactaatcttctgtccctgccttcttaggctggttatcttaccac 739
Query: 540 acttctctccctgctctttatatcagacaatctctattgatttctagttcgcagaccctt 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acttctctctctgctctttatatcagacaatctctattgatttctagttcgcagaccctt 799
Query: 600 ttggactctcaagcctgctactactttaaacaattatggc 639
||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttggactctcaagcctgctactactttaaacaattatggc 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_g19.g1 MSMg01no488_g19.g1 CHROMAT_FILE:
MSMg01no488_g19.g1 PHD_FILE: MSMg01no488_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:21 2005
(648 letters)
>mm_chr18_43261195_43262244
Length = 1050
Score = 839 bits (434), Expect = 0.0
Identities = 455/462 (98%), Gaps = 2/462 (0%)
Strand = Plus / Minus
Query: 1 tttctggacagggaaaagctaaacctaaaatttaaaaatgtgcttactatttatcaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tttctggacagggaaaagctaaacctaaaatttaaaaatgtgcttactatttatcaggga 403
Query: 61 aaaggatttct-atgcattaacaagtaaaataactataggtacaaccaaatcagagttac 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaaggatttctaatgcattaacaagtaaaataactataggtacaaccaaatcagagttac 343
Query: 120 aatttataaaatcagagagaggctaagtaactcaaaaaaaggctgcagtgatataaagta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aatttataaaatcagagagaggctaagtaactcaaaaaaaggctgcagtgatataaagta 283
Query: 180 ggttagtgggaatttaaaaacaggtctctgcttcatgtaaaaaaaa-gtttatataaaat 238
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 282 ggttagtgggaatttaaaaacaggtctctgctttatgtaaaaaaaatgtttatataaaat 223
Query: 239 aatggatcaattgatgaacccattttgagttttttagacagggtctcactctgtaggcta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aatggatcaattgatgaacccattttgagttttttagacagggtctcactctgtaggcta 163
Query: 299 ggctgacctcaacattactaagaaagccacaccagcctccatctctcagcaatcctcctg 358
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 162 ggctgacctcaacattactaaaaaagccacgccagcctccatctctcagcaatcctcctg 103
Query: 359 taccactgtctggacaatcctcatggcagattacaggcattggtcacaaccatatccagc 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 102 taccactgtctggacaatcctcatggcagattacaggcattggtcacaaccacatccagc 43
Query: 419 tacaattctggatatgttttaaaatatttgactaacattgct 460
||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 42 tacaattctggatatgttttaaaatatttgactaacactgct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space: 663520
Effective search space used: 663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
