Query= MSMg01no488_k22.b1 MSMg01no488_k22.b1 CHROMAT_FILE:
MSMg01no488_k22.b1 PHD_FILE: MSMg01no488_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:40 2005
(662 letters)
>mm_chr18_26452614_26453675
Length = 1062
Score = 1203 bits (622), Expect = 0.0
Identities = 653/664 (98%), Gaps = 3/664 (0%)
Strand = Plus / Minus
Query: 1 caaaatgtcttaggaacttcatgacttatgtatactggttctactgcactcatatccaaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 761 caaaatgtcttaggaacttcatgacttatgtatactggtcctactgcactcatatccaaa 702
Query: 61 caagtccagtacagataaactctatccaaaaaaaaaaaaatcattaatttttctttttgc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 701 caagtccagtacagataaactctatcc-aaaaaaaaaaaatcattaatttttctttttgc 643
Query: 121 tttttccttaaaaaa--aaaaataaaaagaaaagaaaagaaactgagcaggaaatctcac 178
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tttttccttaaaaaaataaaaataaaaagaaaagaaaagaaactgagcaggaaatctcac 583
Query: 179 ttaaacaagctgtctcacgacatttctggcaaactctgattccaacgaagttgaaaatat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttaaacaagctgtctcacgacatttctggcaaactctgattccaacgaagttgaaaatat 523
Query: 239 ctcaggagcatcctgtcacacagaatttcagtgcttcttctccaaggaaatgcagaaata 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctcaggagcagcctgtcacacagaatttcagtgcttcttctccaaggaaatgcagaaata 463
Query: 299 gacaacatgtgggattccggggatttagatcacttaagaaaaaacatcataatgtcgact 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gacaacatgtgggattccggggatttagatcacttaagaaaaaacatcataatgtcgact 403
Query: 359 tcaggctgccctgctttaagccagaagcatatgtcgcccccatgcatcggttagcttcta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcaggctgccctgctttaagccagaagcatatgtcgcccccatgcatcggttagcttcta 343
Query: 419 ctgcgtaagaaatcacccctcacacacatttcagtggtttaagcatcacgatttttgtta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctgcgtaagaaatcacccctcacacacatttcagtggtttaagcatcacgatttttgtta 283
Query: 479 ttgttgctcagaacccgtttacagtttgggtaggtaactgtcttgtctttatccgggctc 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 ttgttgctcagaacctgtttacagtttgggtaggtaactgtcttgtctttatctgggctc 223
Query: 539 agctaggctcagcctagtgagtgaactctgctgcccatgattaagtgcgctagaacattt 598
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 222 agctaggttcagcctagtgagtgaactctgctgtccatgattaagtgctctagaacattt 163
Query: 599 gaggcaacttagctctcctccatgtggtcattcactcttcatcagactatcctacaactg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 162 gaggcaacttagctctcctccatgtggtcattcactcttcatcagactatcctacaattg 103
Query: 659 acta 662
||||
Sbjct: 102 acta 99
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_k22.g1 MSMg01no488_k22.g1 CHROMAT_FILE:
MSMg01no488_k22.g1 PHD_FILE: MSMg01no488_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:40 2005
(395 letters)
>mm_chr18_26261786_26262580
Length = 795
Score = 733 bits (379), Expect = 0.0
Identities = 391/395 (98%), Gaps = 1/395 (0%)
Strand = Plus / Plus
Query: 1 tacctaaccgagagatggcttagacagtcaagtgtctgccactcaagtacaaggaccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tacctaaccgagagatggcttagacagtcaagtgtctgccactcaagtacaaggaccagg 261
Query: 61 gtctgaatctccagaacctaaatgagaggctgcacagggctgtgcggacagagacaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtctgaatctccagaacctaaatgagaggctgcacagggctgtgcggacagagacaggca 321
Query: 121 gatctcggaagctaattggccatccaccctagtagaatcaataaactttaagtttagtga 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 322 gatctcggaagctaattggccatccaccctagtagaatcaatgaactttaagtttagtga 381
Query: 181 gagacactatctgaaaaggcaatggtggagagtgatcaaagatgccagacccctgacctc 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 382 gagacactatctgaaaaggcaatggtggagagtgatcaaagatgccag-cccctgacctc 440
Query: 241 tggcctctgtcctcaggtgcccactcttgtaaatacacactcaagtgcaagcaatcacac 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcctctgccctcaggtgcccactcttgtaaatacacactcaagtgcaagcaatcacac 500
Query: 301 caaggaatatatacatcactcaagacccattcacaaacagcagaattccacttctatcct 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaggaatatatacatcactcaagacccattcacaaacagcagaattccacttctatcct 560
Query: 361 tgcttactgatttcccattgagaccttctgctttc 395
|||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttactgatttcccattgagaccttctgctttc 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
